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Ubox5
Gene Detail
Symbol

Name
ID
Ubox5
U box domain containing 5
MGI:2154658
Synonyms
1500010O06Rik, C330018L13Rik, UIP5
Feature Type
protein coding gene
Genetic Map
Chromosome 2
63.24 cM, cytoband F3
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr2:130590002-130630038 bp, - strand
From VEGA annotation of GRCm38

  40037 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:8972  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Ubox5

Human
homologs
Human Homolog UBOX5, U-box domain containing 5
NCBI Gene ID 22888
neXtProt AC  NX_O94941
Human Synonyms  RNF37, UBCE7IP5, UIP5
Human Chr (Location)  20p13; chr20:3107573-3159910 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(7) : Gene trapped(2) Targeted(5)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Ubox5 interacts with 235 markers (Mir1b, Mir7-1, Mir7-2, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (9 annotations)
Process protein polyubiquitination, protein ubiquitination
Component nuclear body, nucleus
Function metal ion binding, ubiquitin protein ligase binding, ...
External Resources: FuncBase
Expression
Literature Summary: (3 records)
Data Summary: Results (45)    Tissues (45)    Images (3)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 45
cDNA source data(12)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(12) cDNA(12)
Microarray probesets(7)
Other database
links
VEGA Gene ModelOTTMUSG00000015515 (Evidence)
Ensembl Gene ModelENSMUSG00000027300 (Evidence)
Entrez Gene140629 (Evidence)
Consensus CDS ProjectCCDS16747.1
International Mouse Knockout Project StatusUbox5
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000015515 VEGA Gene Model | MGI Sequence Detail 40037 C57BL/6J ±  kb
transcript OTTMUST00000058792 VEGA | MGI Sequence Detail 3131 Not Applicable 
polypeptide OTTMUSP00000028533 VEGA | MGI Sequence Detail 598 Not Applicable 

For the selected sequences
All sequences(39) RefSeq(6) UniProt(4)
Polymorphisms
SNPs within 2kb(82 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR010622 FAST kinase leucine-rich
InterPro IPR013579 FAST kinase-like protein, subdomain 2
InterPro IPR003613 U box domain
InterPro IPR013083 Zinc finger, RING/FYVE/PHD-type
InterPro IPR001841 Zinc finger, RING-type
InterPro IPR017907 Zinc finger, RING-type, conserved site
Protein Ontology PR:000017005 RING finger protein 37
References
(Earliest) J:56275 Martinez-Noel G, et al., A family of structurally related RING finger proteins interacts specifically with the ubiquitin-conjugating enzyme UbcM4. FEBS Lett. 1999 Jul 9;454(3):257-61
(Latest) J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
All references(30)
Other
accession IDs
MGI:1344374, MGI:1924000, MGI:2443749

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
10/08/2014
MGI 5.20
The Jackson Laboratory