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Synpo2 Gene Detail
Summary
  • Symbol
    Synpo2
  • Name
    synaptopodin 2
  • Synonyms
    1110069I04Rik, 2310068J10Rik, 9530006G20Rik, Myo, myopodin
  • Feature Type
    protein coding gene
  • IDs
    MGI:2153070
    NCBI Gene: 118449
  • Gene Overview
    MyGene.info: SYNPO2
  • Alliance
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:123076519-123236149 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 3, 53.80 cM, cytoband G3
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    2175 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2153070
protein coding gene Chr3:123076519-123236169 (-)
129S1/SvImJ MGP_129S1SvImJ_G0027847
protein coding gene Chr3:125388553-125549502 (-)
A/J MGP_AJ_G0027806
protein coding gene Chr3:121180820-121335790 (-)
AKR/J MGP_AKRJ_G0027771
protein coding gene Chr3:124272265-124434076 (-)
BALB/cJ MGP_BALBcJ_G0027818
protein coding gene Chr3:120993882-121147789 (-)
C3H/HeJ MGP_C3HHeJ_G0027548
protein coding gene Chr3:124669785-124831036 (-)
C57BL/6NJ MGP_C57BL6NJ_G0028263
protein coding gene Chr3:129915290-130086867 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0025600
protein coding gene Chr3:116604588-116755532 (-)
CAST/EiJ MGP_CASTEiJ_G0027003
protein coding gene Chr3:124071009-124238113 (-)
CBA/J MGP_CBAJ_G0027523
protein coding gene Chr3:134314748-134478906 (-)
DBA/2J MGP_DBA2J_G0027664
protein coding gene Chr3:120308657-120464146 (-)
FVB/NJ MGP_FVBNJ_G0027632
protein coding gene Chr3:117927308-118087290 (-)
LP/J MGP_LPJ_G0027774
protein coding gene Chr3:126890165-127069679 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0027662
protein coding gene Chr3:141887121-142056570 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0028319
protein coding gene Chr3:123831249-123990143 (-)
PWK/PhJ MGP_PWKPhJ_G0026729
protein coding gene Chr3:120042363-120201916 (-)
SPRET/EiJ MGP_SPRETEiJ_G0026553
protein coding gene Chr3:121939028-122100524 (-)
WSB/EiJ MGP_WSBEiJ_G0027083
protein coding gene Chr3:124574622-124734519 (-)



Homology
more
  • Human Ortholog
    SYNPO2, synaptopodin 2
  • Vertebrate Orthologs
    9
  • Human Ortholog
    SYNPO2, synaptopodin 2
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 171024
    neXtProt AC: NX_Q9UMS6
    UniProt: Q9UMS6

  • Chr Location
    4q26; chr4:118850688-119061247 (+)  GRCh38.p7

Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    9 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000050315 Ensembl Gene Model | MGI Sequence Detail 159631 C57BL/6J ±  kb
transcript ENSMUST00000106426 Ensembl | MGI Sequence Detail 7063 Not Applicable  
polypeptide ENSMUSP00000102034 Ensembl | MGI Sequence Detail 1257 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 8
    cDNA 8

    Microarray probesets 7
Other
Accession IDs
less
MGI:1916137, MGI:1922069, MGI:2139816, MGI:2443851
References
more
  • Summaries
    All 38
    Developmental Gene Expression 2
    Diseases 1
    Gene Ontology 8
    Phenotypes 9
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:236599 Dickinson ME, et al., High-throughput discovery of novel developmental phenotypes. Nature. 2016 Sep 14;537(7621):508-514

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory