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Creld1
Gene Detail
Symbol

Name
ID
Creld1
cysteine-rich with EGF-like domains 1
MGI:2152539
Feature Type
protein coding gene
Genetic Map
Chromosome 6
52.77 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr6:113483297-113493338 bp, + strand
From VEGA annotation of GRCm38

  10042 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:32265  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Creld1

Human
homologs
Human Homolog CRELD1, cysteine-rich with EGF-like domains 1
NCBI Gene ID 78987
neXtProt AC  NX_Q96HD1
Human Synonyms  AVSD2, CIRRIN
Human Chr (Location)  3p25.3; chr3:9933800-9945413 (+)  GRCh38
Disease Associations  (1) Diseases Associated with Human CRELD1
Mutations,
alleles, and
phenotypes
All mutations/alleles(15) : Gene trapped(11) Targeted(4)
Incidental mutations (data from Mutagenetix )
Interactions
Creld1 interacts with 72 markers (Mir28b, Mir28c, Mir34a, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (4 annotations)
Process biological_process
Component integral component of membrane, membrane
Function calcium ion binding
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (50)    Tissues (10)    Images (19)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 50
cDNA source data(81)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(81) cDNA(81)
Microarray probesets(2)
Other database
links
VEGA Gene ModelOTTMUSG00000023299 (Evidence)
Ensembl Gene ModelENSMUSG00000030284 (Evidence)
Entrez Gene171508 (Evidence)
UniGene41593
DFCITC1575488, TC1587619, TC1602036
DoTSDT.99858367, DT.99858369, DT.531423, DT.101216472
NIA Mouse Gene IndexU007272
Consensus CDS ProjectCCDS20423.1
International Mouse Knockout Project StatusCreld1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000023299 VEGA Gene Model | MGI Sequence Detail 10042 C57BL/6J ±  kb
transcript OTTMUST00000056426 VEGA | MGI Sequence Detail 2306 Not Applicable 
polypeptide OTTMUSP00000027118 VEGA | MGI Sequence Detail 420 Not Applicable 

For the selected sequences
All sequences(54) RefSeq(3) UniProt(3)
Polymorphisms
SNPs within 2kb(62 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR021852 Domain of unknown function DUF3456
InterPro IPR001881 EGF-like calcium-binding
InterPro IPR018097 EGF-like calcium-binding, conserved site
InterPro IPR013032 EGF-like, conserved site
InterPro IPR002049 EGF-like, laminin
InterPro IPR000152 EGF-type aspartate/asparagine hydroxylation site
InterPro IPR000742 Epidermal growth factor-like domain
InterPro IPR006212 Furin-like repeat
InterPro IPR009030 Insulin-like growth factor binding protein, N-terminal
Protein Ontology PR:000031551 cysteine-rich with EGF-like domain protein 1
References
(Earliest) J:78392 Rupp PA, et al., Identification, genomic organization and mRNA expression of CRELD1, the founding member of a unique family of matricellular proteins. Gene. 2002 Jun 26;293(1-2):47-57
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(36)
Other
accession IDs
MGI:2141490

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
12/09/2014
MGI 5.20
The Jackson Laboratory