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Akr1c20 Gene Detail
Summary
  • Symbol
    Akr1c20
  • Name
    aldo-keto reductase family 1, member C20
  • Synonyms
    2610528B18Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2151104
    NCBI Gene: 116852
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:4486849-4523345 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 13, 2.51 cM, cytoband A1
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    412 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2151104
protein coding gene Chr13:4486849-4523354 (-)
129S1/SvImJ MGP_129S1SvImJ_G0020208
protein coding gene Chr13:965680-1000744 (-)
A/J MGP_AJ_G0020164
protein coding gene Chr13:1061174-1097869 (-)
AKR/J MGP_AKRJ_G0020139
protein coding gene Chr13:1108876-1147317 (-)
BALB/cJ MGP_BALBcJ_G0020147
protein coding gene Chr13:1066264-1101470 (-)
C3H/HeJ MGP_C3HHeJ_G0019951
protein coding gene Chr13:1171027-1214297 (-)
C57BL/6NJ MGP_C57BL6NJ_G0020594
protein coding gene Chr13:1078151-1112616 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0018205
protein coding gene Chr13:1119112-1151891 (-)
CAST/EiJ MGP_CASTEiJ_G0019491
protein coding gene Chr13:982464-1024095 (-)
CBA/J MGP_CBAJ_G0019918
protein coding gene Chr13:1069667-1109813 (-)
DBA/2J MGP_DBA2J_G0020035
protein coding gene Chr13:976946-1011085 (-)
FVB/NJ MGP_FVBNJ_G0020020
protein coding gene Chr13:939833-975279 (-)
LP/J MGP_LPJ_G0020109
protein coding gene Chr13:1064072-1108838 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0020056
protein coding gene Chr13:1201365-1219157 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0020622
protein coding gene Chr13:1040147-1086536 (-)
PWK/PhJ MGP_PWKPhJ_G0019252
protein coding gene Chr13:1073072-1089605 (-)
SPRET/EiJ MGP_SPRETEiJ_G0019059
protein coding gene Chr13:1107151-1143760 (-)
WSB/EiJ MGP_WSBEiJ_G0019549
protein coding gene Chr13:990999-1027379 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000054757 Ensembl Gene Model | MGI Sequence Detail 36497 C57BL/6J ±  kb
transcript ENSMUST00000080361 Ensembl | MGI Sequence Detail 1337 Not Applicable  
polypeptide ENSMUSP00000079232 Ensembl | MGI Sequence Detail 323 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    3 Sequences
  • InterPro Domains
    IPR020471 Aldo/keto reductase
    IPR018170 Aldo/keto reductase, conserved site
    IPR023210 NADP-dependent oxidoreductase domain
    IPR036812 NADP-dependent oxidoreductase domain superfamily
Molecular
Reagents
less
  • All nucleic 13
    cDNA 13

    Microarray probesets 3
References
more
  • Summaries
    All 18
    Gene Ontology 3
    Phenotypes 3
  • Earliest
    J:82195 Vergnes L, et al., A cluster of eight hydroxysteroid dehydrogenase genes belonging to the aldo-keto reductase supergene family on mouse chromosome 13. J Lipid Res. 2003 Mar;44(3):503-11
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/13/2018
MGI 6.13
The Jackson Laboratory