Wdr87 Gene Detail

Summary

• Symbol
  Wdr87
• Name
  WD repeat domain 87
• Synonyms
  4932431P20Rik, Wdr87-ps

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:2149781
  NCBI Gene: 114675
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:29223968-29237289 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 17.07 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  336 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2149781	protein coding gene	Chr7:29218688-29237289 (+)
129S1/SvImJ	ENSMUSG00200045367	pseudogene	Chr7:19021811-19035322 (+)
A/J	ENSMUSG00195049193	pseudogene	Chr7:21691180-21704704 (+)
AKR/J	ENSMUSG00220053402	pseudogene	Chr7:22788995-22802513 (-)
BALB/cJ	ENSMUSG00180053999	pseudogene	Chr7:19750601-19764140 (+)
C3H/HeJ	ENSMUSG00175039225	pseudogene	Chr7:20790356-20803872 (+)
C57BL/6NJ	ENSMUSG00215054833	pseudogene	Chr7:18914272-18927788 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0029484	protein coding gene	Chr7:28746204-28764645 (+)
CAST/EiJ	ENSTCUG00005050000	pseudogene	Chr7:20735717-20749091 (+)
CBA/J	ENSMUSG00210053449	pseudogene	Chr7:19974862-19988376 (+)
DBA/2J	ENSMUSG00185054238	pseudogene	Chr7:23075568-23089084 (+)
FVB/NJ	ENSMUSG00205052910	pseudogene	Chr7:19755495-19768784 (+)
JF1/MsJ	ENSUMUG00000057463	pseudogene	Chr7:27501893-27515279 (+)
LP/J	ENSMUSG00230053926	pseudogene	Chr7:28246066-28259582 (+)
NOD/ShiLtJ	ENSMUSG00190052939	pseudogene	Chr7:19409854-19423359 (+)
NZO/HlLtJ	ENSMUSG00225027679	pseudogene	Chr7:27089249-27102764 (+)
PWK/PhJ	ENSLUMG00010052142	pseudogene	Chr7:19464829-19478236 (+)
SPRET/EiJ	ENSMSPG00010051870	pseudogene	Chr7:18807964-18820964 (+)
WSB/EiJ	ENSIUOG00005053630	pseudogene	Chr7:13683929-13697248 (+)

Homology

• Human Ortholog
  WDR87, WD repeat domain 87

• Vertebrate Orthologs
  1

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  WDR87, WD repeat domain 87
  
• Synonyms
  NYD-SP11
• Links
  HGNC:29934

  NCBI Gene ID: 83889

  UniProt: Q6ZQQ6

  
  
• Chr Location
  19q13.13; chr19:37884823-37906697 (-)  GRCh38

---

• MGI Vertebrate Homology
  Wdr87 stringent orthology
  1 human;1 mouse
  
• HCOP
  vertebrate homology predictions: WDR87
• Gene Tree
  Wdr87
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  53 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  2
• UniProt
  1
• CCDS
  CCDS21072.1

• Ensembl
  ENSMUSG00000074224 (Evidence)
• NCBI Gene
  114675

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000074224	Ensembl Gene Model | MGI Sequence Detail	13322	C57BL/6J
transcript	ENSMUST00000141713	Ensembl | MGI Sequence Detail	9288	Not Applicable
polypeptide	NP_001434294	RefSeq | MGI Sequence Detail	3095	C57BL/6

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  Genomic 2

  cDNA 2

  
  

  Microarray probesets 4

Other
Accession IDs

MGI:6723881, MGI:8192967

References

• Summaries
  All 23

  Phenotypes 4
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136

TSS for Wdr87:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr65635	Chr7:29233832-29233839 (+)	9,868 bp