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Slc13a3
Gene Detail
Symbol

Name
ID
Slc13a3
solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3
MGI:2149635
Synonyms
NaDC3, NaDC-3, SDCT2
Feature Type
protein coding gene
Genetic Map
Chromosome 2
85.54 cM, cytoband H3
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr2:165405028-165473230 bp, - strand
From VEGA annotation of GRCm38

  68203 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:11266  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: SLC13A3
Gene Tree: Slc13a3

Human
homologs
SLC13A3, solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 64849
neXtProt AC: NX_Q8WWT9

Human Synonyms: NADC3, SDCT2

Human Chr (Location): 20q13.12; chr20:46557823-46684485 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(2) : Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Slc13a3 interacts with 206 markers (Mir10b, Mir15a, Mir15b, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (5 records)
Data Summary: Results (153)    Tissues (131)    Images (14)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 150
Northern blot 3
cDNA source data(60)
Other mouse links: Allen Institute   GENSAT   GEO   Expression Atlas
Other vertebrate links: Xenbase slc13a3 ; ZFIN slc13a3    NEW 
Molecular
reagents
All nucleic(63) cDNA(61) Primer pair(1) Other(1)
Microarray probesets(3)
Other database
links
VEGA Gene Model OTTMUSG00000001182 (Evidence)
Ensembl Gene Model ENSMUSG00000018459 (Evidence)
Entrez Gene 114644 (Evidence)
UniGene 250738
DFCI TC1574943, TC1747827
DoTS DT.101734691, DT.97389829
NIA Mouse Gene Index U023662
Consensus CDS Project CCDS17081.1
International Mouse Phenotyping Consortium Status Slc13a3
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000001182 VEGA Gene Model | MGI Sequence Detail 68203 C57BL/6J ±  kb
transcript OTTMUST00000002317 VEGA | MGI Sequence Detail 3524 Not Applicable 
polypeptide OTTMUSP00000001142 VEGA | MGI Sequence Detail 600 Not Applicable 

For the selected sequences
All sequences(41) RefSeq(6) UniProt(3)
Polymorphisms
SNPs within 2kb(532 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR001898 Sodium/sulphate symporter
Protein Ontology PR:000014935 solute carrier family 13 member 3
References
(Earliest) J:69262 Pajor AM, et al., Cloning and functional characterization of a high-affinity Na(+)/dicarboxylate cotransporter from mouse brain. Am J Physiol Cell Physiol. 2001 May;280(5):C1215-23
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(36)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/18/2015
MGI 6.0
The Jackson Laboratory