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Ubap1
Gene Detail
Symbol

Name
ID
Ubap1
ubiquitin-associated protein 1
MGI:2149543
Synonyms
2700092A01Rik, NAG20
Feature Type
protein coding gene
Genetic Map
Chromosome 4
21.43 cM, cytoband B1
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr4:41348996-41390525 bp, + strand
From VEGA annotation of GRCm38

  41530 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:9554  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Ubap1

Human
homologs
Human Homolog UBAP1, ubiquitin associated protein 1
NCBI Gene ID 51271
neXtProt AC  NX_Q9NZ09
Human Synonyms  NAG20, UAP, UBAP, UBAP-1
Human Chr (Location)  9p13.3; chr9:34179005-34252523 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(36) : Gene trapped(34) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Ubap1 interacts with 241 markers (Mir7-1, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (8 annotations)
Process protein transport, transport, ...
Component cytoplasm, cytosol, ...
Function ubiquitin binding
External Resources: FuncBase
Expression
cDNA source data(10)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(10) cDNA(10)
Microarray probesets(6)
Other database
links
VEGA Gene ModelOTTMUSG00000006663 (Evidence)
Ensembl Gene ModelENSMUSG00000028437 (Evidence)
Entrez Gene67123 (Evidence)
DFCITC1572370, TC1631685, TC1746359
NIA Mouse Gene IndexU004210
Consensus CDS ProjectCCDS51140.1, CCDS71361.1
International Mouse Knockout Project StatusUbap1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000006663 VEGA Gene Model | MGI Sequence Detail 41530 C57BL/6J ±  kb
transcript OTTMUST00000015236 VEGA | MGI Sequence Detail 3456 Not Applicable 
polypeptide OTTMUSP00000007041 VEGA | MGI Sequence Detail 502 Not Applicable 

For the selected sequences
All sequences(58) RefSeq(10) UniProt(3)
Polymorphisms
SNPs within 2kb(61 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR009060 UBA-like
InterPro IPR015940 Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote
InterPro IPR023340 UMA domain
Protein Ontology PR:000016958 ubiquitin-associated protein 1
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(32)
Other
accession IDs
MGI:1914373

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
10/08/2014
MGI 5.20
The Jackson Laboratory