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Ubap1 Gene Detail
Summary
  • Symbol
    Ubap1
  • Name
    ubiquitin-associated protein 1
  • Synonyms
    2700092A01Rik, NAG20
  • Feature Type
    protein coding gene
  • IDs
    MGI:2149543
    NCBI Gene: 67123
  • Gene Overview
    MyGene.info: UBAP1
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:41348996-41389766 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 21.43 cM, cytoband B1
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    57 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2149543
protein coding gene Chr4:41348996-41390525 (.)
129S1/SvImJ MGP_129S1SvImJ_G0028159
protein coding gene Chr4:39289981-39336150 (+)
A/J MGP_AJ_G0028117
protein coding gene Chr4:37797544-37839502 (+)
AKR/J MGP_AKRJ_G0028080
protein coding gene Chr4:38773215-38817096 (+)
BALB/cJ MGP_BALBcJ_G0028129
protein coding gene Chr4:38128212-38172350 (+)
C3H/HeJ MGP_C3HHeJ_G0027857
protein coding gene Chr4:39320735-39367856 (+)
C57BL/6NJ MGP_C57BL6NJ_G0028570
protein coding gene Chr4:40743462-40792918 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0025911
protein coding gene Chr4:35450259-35494155 (+)
CAST/EiJ MGP_CASTEiJ_G0027313
protein coding gene Chr4:38992815-39039383 (+)
CBA/J MGP_CBAJ_G0027829
protein coding gene Chr4:42137317-42185227 (+)
DBA/2J MGP_DBA2J_G0027973
protein coding gene Chr4:37717938-37763071 (+)
FVB/NJ MGP_FVBNJ_G0027940
protein coding gene Chr4:37050060-37092902 (+)
LP/J MGP_LPJ_G0028081
protein coding gene Chr4:39358979-39408526 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0027973
protein coding gene Chr4:45447885-45494032 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0028629
protein coding gene Chr4:38890360-38933663 (+)
PWK/PhJ MGP_PWKPhJ_G0027032
protein coding gene Chr4:37742471-37791594 (+)
SPRET/EiJ MGP_SPRETEiJ_G0026859
protein coding gene Chr4:38615411-38661654 (+)
WSB/EiJ MGP_WSBEiJ_G0027389
protein coding gene Chr4:38869593-38916544 (+)



Homology
more
  • Human Ortholog
    UBAP1, ubiquitin associated protein 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    UBAP1, ubiquitin associated protein 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    NAG20, UAP, UBAP, UBAP-1
  • Links
    NCBI Gene ID: 51271
    neXtProt AC: NX_Q9NZ09
    UniProt: Q9NZ09

  • Chr Location
    9p13.3; chr9:34179005-34252523 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 9554
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: UBAP1
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 67123 NCBI Gene Model | MGI Sequence Detail 40771 C57BL/6J ±  kb
transcript NM_001355508 RefSeq | MGI Sequence Detail 5554 C57BL/6  
polypeptide Q8BH48 UniProt | EBI | MGI Sequence Detail 502 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 11
    cDNA 11

    Microarray probesets 6
Other
Accession IDs
less
MGI:1914373
References
more
  • Summaries
    All 31
    Gene Ontology 4
    Phenotypes 8
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory