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Ubap1 Gene Detail
Summary
  • Symbol
    Ubap1
  • Name
    ubiquitin-associated protein 1
  • Synonyms
    2700092A01Rik, NAG20
  • Feature Type
    protein coding gene
  • IDs
    MGI:2149543
    NCBI Gene: 67123
  • Gene Overview
    MyGene.info: UBAP1
Location & Maps
more
  • Sequence Map
    Chr4:41348996-41390525 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      41530 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 21.43 cM, cytoband B1
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    UBAP1, ubiquitin associated protein 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    UBAP1, ubiquitin associated protein 1
    Orthology source: HomoloGene
  • Synonyms
    NAG20, UAP, UBAP, UBAP-1
  • Links
    NCBI Gene ID: 51271
    neXtProt AC: NX_Q9NZ09

  • Chr Location
    9p13.3; chr9:34179005-34252523 (+)  GRCh38.p2

  • HomoloGene
    Vertebrate Homology Class 9554
    1 human;1 mouse;1 rat;1 chimpanzee;1 rhesus macaque;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed
  • HCOP
    human homology predictions: UBAP1
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
  • All Mutations and Alleles
    37
  • Chemically and radiation induced
    1
  • Gene trapped
    34
  • Targeted
    2
  • Genomic Mutations
    1 involving Ubap1
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000006663 VEGA Gene Model | MGI Sequence Detail 41530 C57BL/6J ±  kb
transcript OTTMUST00000015236 VEGA | MGI Sequence Detail 3456 Not Applicable  
polypeptide OTTMUSP00000007041 VEGA | MGI Sequence Detail 502 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    59 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 10
    cDNA 10

    Microarray probesets 6
Other
Accession IDs
less
MGI:1914373
References
more
  • Summaries
    All 28
    Gene Ontology 2
    Phenotypes 8
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/23/2016
MGI 6.05
The Jackson Laboratory