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Gpank1
Gene Detail
 Symbol
Name
ID
Gpank1
G patch domain and ankyrin repeats 1
MGI:2148975
Synonyms Bat4, D17H6S54E, G5
Feature Type protein coding gene
Genetic Map
Chromosome 17
18.59 cM
Detailed Genetic Map ± 1 cM


Mapping data(7)
Sequence Map
Chr17:35121455-35124814 bp, + strand
From VEGA annotation of GRCm38

  3360 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:13035  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 dog; 1 western clawed frog; 1 zebrafish

Gene Tree: Gpank1

Human
homologs
Human Homolog GPANK1, G patch domain and ankyrin repeats 1
NCBI Gene ID 7918
neXtProt AC  NX_O95872
Human Synonyms  ANKRD59, BAT4, D6S54E, G5, GPATCH10
Human Chr (Location)  6p21.3; chr6:31661229-31666283 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(11) : Gene trapped(9) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Gpank1 interacts with 17 markers (Mir105, Mir125b-2, Mir150, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (4 annotations)
Process biological_process
Component cellular_component
Function nucleic acid binding, protein binding
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (24)    Tissues (24)    Images (5)
Theiler Stages: 5, 21, 27
Assay TypeResults
RNA in situ 22
RT-PCR 2
cDNA source data(10)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(30) Genomic(16) cDNA(12) Primer pair(2)
Microarray probesets(7)
Other database
links
VEGA Gene ModelOTTMUSG00000037177 (Evidence)
Ensembl Gene ModelENSMUSG00000092417 (Evidence)
Entrez Gene81845 (Evidence)
DFCITC1579328, TC1604373
DoTSDT.101131280, DT.55100749, DT.55138796, DT.55197870, DT.91359529, DT.94133394
Consensus CDS ProjectCCDS28685.1, CCDS50084.1
International Mouse Knockout Project StatusGpank1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000037177 VEGA Gene Model | MGI Sequence Detail 3360 C57BL/6J ±  kb
transcript OTTMUST00000095786 VEGA | MGI Sequence Detail 1295 Not Applicable 
polypeptide OTTMUSP00000053467 VEGA | MGI Sequence Detail 372 Not Applicable 

For the selected sequences
All sequences(84) RefSeq(36) UniProt(5)
Polymorphisms RFLP(1) : SNPs within 2kb(28 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR002110 Ankyrin repeat
InterPro IPR020683 Ankyrin repeat-containing domain
InterPro IPR000467 G-patch domain
Protein Ontology PR:000004652 G patch domain and ankyrin repeat-containing protein 1
References (Earliest) J:1314 Lafuse WP, et al., PFGE mapping and RFLP analysis of the S/D region of the mouse H-2 complex. Immunogenetics. 1992;36(2):110-6
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(41)
Other
accession IDs
MGD-MRK-1501, MGD-MRK-1509, MGD-MRK-16251, MGI:99477

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/26/2014
MGI 5.19
The Jackson Laboratory