Gpank1
Gene Detail

Symbol Name ID

Gpank1 G patch domain and ankyrin repeats 1 MGI:2148975

Synonyms

Bat4, D17H6S54E, G5

Feature Type

protein coding gene

Genetic Map

Chromosome 17

18.59 cM
Detailed Genetic Map ± 1 cM


Mapping data(7)

Sequence Map

Chr17:35121455-35124814 bp, + strand From VEGA annotation of GRCm38   3360 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:13035  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 cattle; 1 dog; 1 zebrafish

Gene Tree: Gpank1

Human homologs

Human Homolog		GPANK1, G patch domain and ankyrin repeats 1
NCBI Gene ID		7918
neXtProt AC		NX_O95872
Human Synonyms		ANKRD59, BAT4, D6S54E, G5, GPATCH10
Human Chr (Location)		6p21.3; chr6:31629006-31634060 (-)  GRCh37.p10

Alleles and phenotypes

All alleles(10) : Targeted(1) Gene trapped(9)

Gene Ontology (GO) classifications

All GO classifications: (4 annotations)

Process	biological_process
Component	cellular_component
Function	nucleic acid binding, protein binding

External Resources: FuncBase

Expression

Literature Summary: (2 records)
Data Summary: Results (24)    Tissues (24)    Images (5)
Theiler Stages: 5, 21, 28

Assay Type	Results
RNA in situ	22
RT-PCR	2

cDNA source data(10)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(30) Genomic(16) cDNA(12) Primer pair(2)
Microarray probesets(7)

Other database links

VEGA Gene Model	OTTMUSG00000037177 (Evidence)
Ensembl Gene Model	ENSMUSG00000092417 (Evidence)
Entrez Gene	81845 (Evidence)
DFCI	TC1579328, TC1604373
DoTS	DT.101131280, DT.55100749, DT.55138796, DT.55197870, DT.91359529, DT.94133394
Consensus CDS Project	CCDS28685.1, CCDS50084.1
International Mouse Knockout Project Status	Gpank1

Sequences

Length	Strain/Species
genomic	OTTMUSG00000037177	VEGA Gene Model | MGI Sequence Detail	3360	C57BL/6J
transcript	OTTMUST00000095786	VEGA | MGI Sequence Detail	1295	Not Applicable
polypeptide	OTTMUSP00000053467	VEGA | MGI Sequence Detail	372	Not Applicable

All sequences(52) RefSeq(4) UniProt(5)

Polymorphisms

RFLP(1) : SNPs(6 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR002110	Ankyrin repeat
InterPro	IPR020683	Ankyrin repeat-containing domain
InterPro	IPR000467	G-patch domain
Protein Ontology	PR:000004652	protein BAT4

References

(Earliest) J:1314 Lafuse WP, et al., PFGE mapping and RFLP analysis of the S/D region of the mouse H-2 complex. Immunogenetics. 1992;36(2):110-6
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(39)

Other accession IDs

MGD-MRK-1501, MGD-MRK-1509, MGD-MRK-16251, MGI:99477