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Gpank1 Gene Detail
Summary
  • Symbol
    Gpank1
  • Name
    G patch domain and ankyrin repeats 1
  • Synonyms
    Bat4, D17H6S54E, G5
  • Feature Type
    protein coding gene
  • IDs
    MGI:2148975
    NCBI Gene: 81845
  • Gene Overview
    MyGene.info: GPANK1
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:35121473-35124815 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 17, 18.59 cM
  • Mapping Data
    7 experiments
Strain
Comparison
more
  • Strain Annotations
    17
  • RFLP
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2148975
protein coding gene Chr17:35121455-35124815 (.)
129S1/SvImJ MGP_129S1SvImJ_G0023620
protein coding gene Chr17:35262641-35266228 (+)
A/J MGP_AJ_G0023580
protein coding gene Chr17:34095150-34098122 (+)
AKR/J MGP_AKRJ_G0023548
protein coding gene Chr17:34571446-34573353 (+)
BALB/cJ MGP_BALBcJ_G0023586
protein coding gene Chr17:34233798-34237101 (+)
C3H/HeJ MGP_C3HHeJ_G0023347
protein coding gene Chr17:34970981-34975130 (+)
C57BL/6NJ MGP_C57BL6NJ_G0024025
protein coding gene Chr17:36603500-36608493 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0021506
protein coding gene Chr17:31863665-31867216 (+)
CAST/EiJ MGP_CASTEiJ_G0022843
protein coding gene Chr17:34967136-34971404 (+)
CBA/J no annotation
DBA/2J MGP_DBA2J_G0023453
protein coding gene Chr17:33419011-33419693 (+)
FVB/NJ MGP_FVBNJ_G0023420
protein coding gene Chr17:33256977-33260907 (+)
LP/J MGP_LPJ_G0023530
protein coding gene Chr17:35592050-35595393 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0023442
protein coding gene Chr17:37044568-37047896 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0024070
protein coding gene Chr17:34789897-34794862 (+)
PWK/PhJ MGP_PWKPhJ_G0022591
protein coding gene Chr17:32252170-32255498 (+)
SPRET/EiJ MGP_SPRETEiJ_G0022411
protein coding gene Chr17:32805160-32808423 (+)
WSB/EiJ MGP_WSBEiJ_G0022907
protein coding gene Chr17:34909984-34914725 (+)



Homology
more
  • Human Ortholog
    GPANK1, G-patch domain and ankyrin repeats 1
  • Vertebrate Orthologs
    8
  • Human Ortholog
    GPANK1, G-patch domain and ankyrin repeats 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    ANKRD59, BAT4, D6S54E, G5, GPATCH10
  • Links
    NCBI Gene ID: 7918
    neXtProt AC: NX_O95872
    UniProt: O95872

  • Chr Location
    6p21.33; chr6:31661229-31666283 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    4 phenotypes from 1 allele in 1 genetic background
    8 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 81845 NCBI Gene Model | MGI Sequence Detail 3343 C57BL/6J ±  kb
    transcript NM_001128597 RefSeq | MGI Sequence Detail 1506 C57BL/6  
    polypeptide Q61858 UniProt | EBI | MGI Sequence Detail 372 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      5 Sequences
    • Protein Ontology
      PR:000004652 G patch domain and ankyrin repeat-containing protein 1
    • InterPro Domains
      IPR020683 Ankyrin repeat-containing domain
      IPR036770 Ankyrin repeat-containing domain superfamily
      IPR000467 G-patch domain
      IPR039146 G patch domain and ankyrin repeat-containing protein 1
    Molecular
    Reagents
    less
    • All nucleic 31
      Genomic 16
      cDNA 13
      Primer pair 2

      Microarray probesets 7
    Other
    Accession IDs
    less
    MGD-MRK-1501, MGD-MRK-1509, MGD-MRK-16251, MGI:99477
    References
    more
    • Summaries
      All 40
      Developmental Gene Expression 3
      Gene Ontology 2
      Phenotypes 8
    • Earliest
      J:1314 Lafuse WP, et al., PFGE mapping and RFLP analysis of the S/D region of the mouse H-2 complex. Immunogenetics. 1992;36(2):110-6
    • Latest
      J:239479 Arora H, et al., Prokineticin receptor 1 is required for mesenchymal-epithelial transition in kidney development. FASEB J. 2016 Aug;30(8):2733-40

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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    last database update
    11/06/2018
    MGI 6.13
    The Jackson Laboratory