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Sec16b
Gene Detail
Symbol

Name
ID
Sec16b
SEC16 homolog B (S. cerevisiae)
MGI:2148802
Synonyms
Lztr2, Rgpr, Rgpr-p117
Feature Type
protein coding gene
Genetic Map
Chromosome 1
68.00 cM, cytoband H1
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr1:157506728-157568425 bp, + strand
From VEGA annotation of GRCm38

  61698 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:13227  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog

Gene Tree: Sec16b

Human
homologs
Human Homolog SEC16B, SEC16 homolog B (S. cerevisiae)
NCBI Gene ID 89866
neXtProt AC  NX_Q96JE7
Human Synonyms  LZTR2, PGPR-p117, RGPR, SEC16S
Human Chr (Location)  1q25.2; chr1:177929107-177969915 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(2) : Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Sec16b interacts with 223 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (15 annotations)
Process COPII vesicle coating, endoplasmic reticulum organization, ...
Component endoplasmic reticulum, Golgi apparatus, ...
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (176)    Tissues (18)    Images (45)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 176
cDNA source data(25)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(25) cDNA(25)
Microarray probesets(2)
Other database
links
VEGA Gene ModelOTTMUSG00000022599 (Evidence)
Ensembl Gene ModelENSMUSG00000026589 (Evidence)
Entrez Gene89867 (Evidence)
UniGene87114
DFCITC1583446, TC1701940
DoTSDT.101725233, DT.110888875, DT.528598, DT.99839762
NIA Mouse Gene IndexU000965
Consensus CDS ProjectCCDS15400.1
International Mouse Knockout Project StatusSec16b
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000022599 VEGA Gene Model | MGI Sequence Detail 61698 C57BL/6J ±  kb
transcript OTTMUST00000054130 VEGA | MGI Sequence Detail 4664 Not Applicable 
polypeptide OTTMUSP00000025792 VEGA | MGI Sequence Detail 1051 Not Applicable 

For the selected sequences
All sequences(57) RefSeq(19) UniProt(2)
Polymorphisms
SNPs within 2kb(741 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR024880 COPII coat assembly protein, Sec16
InterPro IPR024340 Sec16, central conserved domain
Protein Ontology PR:000014582 protein transport protein Sec16B
References
(Earliest) J:71988 Misawa H, et al., Molecular cloning and sequencing of the cDNA coding for a novel regucalcin gene promoter region-related protein in rat, mouse and human liver. Int J Mol Med. 2001 Nov;8(5):513-20
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(29)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
10/08/2014
MGI 5.20
The Jackson Laboratory