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Jade3
Gene Detail
 Symbol
Name
ID
Jade3
jade family PHD finger 3
MGI:2148019
Synonyms mKIAA0215, Phf16
Feature Type protein coding gene
Genetic Map
Chromosome X
15.90 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
ChrX:20425688-20519939 bp, + strand
From VEGA annotation of GRCm38

  94252 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:40981  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Jade3

Human
homologs
Human Homolog JADE3, jade family PHD finger 3
NCBI Gene ID 9767
neXtProt AC  NX_Q92613
Human Synonyms  JADE-3, PHF16
Human Chr (Location)  Xp11.23; chrX:46912276-47061242 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(12) : Gene trapped(10) Targeted(2)
 
Male chimeras hemizygous for a gene trapped allele appear normal at E9.5.
 
Phenotype Images(10)
Interactions
Jade3 interacts with 339 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (7 annotations)
Process histone H3 acetylation, histone H4-K12 acetylation, ...
Component histone acetyltransferase complex
Function metal ion binding, zinc ion binding
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (118)    Tissues (109)    Images (6)
Theiler Stages: 22, 23
Assay TypeResults
RNA in situ 118
cDNA source data(34)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(35) cDNA(34) Primer pair(1)
Microarray probesets(3)
Other database
links
VEGA Gene ModelOTTMUSG00000017083 (Evidence)
Ensembl Gene ModelENSMUSG00000037315 (Evidence)
Entrez Gene382207 (Evidence)
UniGene281517
DFCITC1597704, TC1612932, TC1626891
DoTSDT.101161451, DT.101259689, DT.94251822
NIA Mouse Gene IndexU043749
Consensus CDS ProjectCCDS30042.1
International Mouse Knockout Project StatusJade3
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000017083 VEGA Gene Model | MGI Sequence Detail 94252 C57BL/6J ±  kb
transcript OTTMUST00000041366 VEGA | MGI Sequence Detail 4866 Not Applicable 
polypeptide OTTMUSP00000018564 VEGA | MGI Sequence Detail 823 Not Applicable 

For the selected sequences
All sequences(35) RefSeq(6) UniProt(2)
Polymorphisms SNPs within 2kb(104 from dbSNP Build 137)    SNPs within 2kb including multiple locations(108)
Protein-related
information
ResourceIDDescription
InterPro IPR019542 Enhancer of polycomb-like, N-terminal
InterPro IPR011011 Zinc finger, FYVE/PHD-type
InterPro IPR019787 Zinc finger, PHD-finger
InterPro IPR001965 Zinc finger, PHD-type
InterPro IPR019786 Zinc finger, PHD-type, conserved site
InterPro IPR013083 Zinc finger, RING/FYVE/PHD-type
Protein Ontology PR:000012643 protein Jade-3
References (Earliest) J:86562 Tzouanacou E, et al., Identification of Jade1, a gene encoding a PHD zinc finger protein, in a gene trap mutagenesis screen for genes involved in anteroposterior axis development. Mol Cell Biol. 2003 Dec;23(23):8553-2
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(35)
Other
accession IDs
MGI:2147927

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/09/2014
MGI 5.19
The Jackson Laboratory