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Firre Gene Detail
Summary
  • Symbol
    Firre
  • Name
    functional intergenic repeating RNA element
  • Synonyms
    5830467J12Rik, 6720401G13Rik
  • Feature Type
    unclassified non-coding RNA gene
  • IDs
    MGI:2147989
    NCBI Gene: 103012
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:50563120-50635321 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome X, 26.53 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    217 from dbSNP Build 142
  • Strain Annotations
    16
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2147989
unclassified non-coding RNA gene ChrX:50555744-50635321 (-)
129S1/SvImJ MGP_129S1SvImJ_G0015777
unclassified non-coding RNA gene ChrX:45696757-45781912 (-)
A/J MGP_AJ_G0015754
unclassified non-coding RNA gene ChrX:45565558-45651331 (-)
AKR/J MGP_AKRJ_G0015716
unclassified non-coding RNA gene ChrX:46798339-46907763 (-)
BALB/cJ MGP_BALBcJ_G0015715
unclassified non-coding RNA gene ChrX:45158707-45253196 (-)
C3H/HeJ MGP_C3HHeJ_G0015535
unclassified non-coding RNA gene ChrX:45986953-46062219 (-)
C57BL/6NJ MGP_C57BL6NJ_G0016169
unclassified non-coding RNA gene ChrX:46750012-46884950 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0013893
unclassified non-coding RNA gene ChrX:43176997-43246304 (-)
CAST/EiJ MGP_CASTEiJ_G0015090
unclassified non-coding RNA gene ChrX:33407547-33506091 (-)
CBA/J MGP_CBAJ_G0015515
unclassified non-coding RNA gene ChrX:48097713-48181076 (-)
DBA/2J MGP_DBA2J_G0015613
unclassified non-coding RNA gene ChrX:45416304-45503413 (-)
FVB/NJ no annotation
LP/J MGP_LPJ_G0015695
unclassified non-coding RNA gene ChrX:46029865-46116289 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0015641
unclassified non-coding RNA gene ChrX:49597251-49712394 (-)
NZO/HlLtJ no annotation
PWK/PhJ MGP_PWKPhJ_G0014872
unclassified non-coding RNA gene ChrX:32889199-33034688 (-)
SPRET/EiJ MGP_SPRETEiJ_G0014659
unclassified non-coding RNA gene ChrX:34207416-34309204 (-)
WSB/EiJ MGP_WSBEiJ_G0015194
unclassified non-coding RNA gene ChrX:45151966-45234739 (-)



Homology
more
  • Human Ortholog
    FIRRE, firre intergenic repeating RNA element
  • Human Ortholog
    FIRRE, firre intergenic repeating RNA element
    Orthology source: HGNC
  • Synonyms
    LINC01200
  • Links
    NCBI Gene ID: 286467

  • Chr Location
    Xq26.2; chrX:131702650-131830643 (-)  GRCh38.p7

  • HCOP
    human homology predictions: FIRRE
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Sequences &
Gene Models
less
  • All Sequences
  • RefSeq
  • UniProt
  • UniGene
Representative SequencesLengthStrain/SpeciesFlank
genomic 103012 NCBI Gene Model | MGI Sequence Detail 72202 C57BL/6J ±  kb
transcript NR_015505 RefSeq | MGI Sequence Detail 5832 C57BL/6  
polypeptide Q3V1H2 UniProt | EBI | MGI Sequence Detail 85 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 90
    cDNA 90

    Microarray probesets 4
Other
Accession IDs
less
MGI:2442400
References
more
  • Summaries
    All 25
    Developmental Gene Expression 1
    Phenotypes 6
  • Earliest
    J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-Le-Grand). 1999 Jul;45(5):737-50
  • Latest
    J:261345 Barutcu AR, et al., A TAD boundary is preserved upon deletion of the CTCF-rich Firre locus. Nat Commun. 2018 Apr 13;9(1):1444

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory