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Firre Gene Detail
Summary
  • Symbol
    Firre
  • Name
    functional intergenic repeating RNA element
  • Synonyms
    5830467J12Rik, 6720401G13Rik
Location &
Maps
more
  • Sequence Map
    ChrX:49651997-49724198 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 26.53 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    2812 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2147989
 lncRNA gene ChrX:49644621-49724249 (-)
129S1/SvImJ ENSMUSG00200037974
 lncRNA gene ChrX:33486554-33566121 (-)
A/J ENSMUSG00195017501
 lncRNA gene ChrX:36291354-36370922 (-)
AKR/J ENSMUSG00220040483
 lncRNA gene ChrX:33150824-33230395 (-)
BALB/cJ ENSMUSG00180036139
 lncRNA gene ChrX:34005887-34085455 (-)
C3H/HeJ ENSMUSG00175044005
 lncRNA gene ChrX:37025230-37104803 (-)
C57BL/6NJ ENSMUSG00215048646
 lncRNA gene ChrX:34031836-34111418 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0013893
 unclassified non-coding RNA gene ChrX:43176997-43246304 (-)
CAST/EiJ ENSTCUG00005039689
 lncRNA gene ChrX:35989601-36071490 (-)
CBA/J ENSMUSG00210040903
 lncRNA gene ChrX:34267989-34347546 (-)
DBA/2J ENSMUSG00185034054
 lncRNA gene ChrX:44973754-45053316 (-)
FVB/NJ ENSMUSG00205032587
 lncRNA gene ChrX:32627006-32706561 (-)
JF1/MsJ ENSUMUG00000031933
 lncRNA gene ChrX:64011204-64094492 (-)
LP/J ENSMUSG00230029671
 lncRNA gene ChrX:51506658-51586229 (-)
NOD/ShiLtJ ENSMUSG00190038500
 lncRNA gene ChrX:33367222-33446786 (-)
NZO/HlLtJ ENSMUSG00225043310
 lncRNA gene ChrX:56700292-56779856 (-)
PWK/PhJ ENSLUMG00010043225
 lncRNA gene ChrX:33694693-33787342 (-)
SPRET/EiJ ENSMSPG00010025383
 lncRNA gene ChrX:35332919-35420482 (-)
WSB/EiJ ENSIUOG00005048634
 lncRNA gene ChrX:34537614-34625077 (-)



Homology
more
  • Human Ortholog
    FIRRE, firre intergenic repeating RNA element
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    FIRRE, firre intergenic repeating RNA element
  • Synonyms
    LINC01200
  • Links
    NCBI Gene ID: 286467

  • Chr Location
    Xq26.2; chrX:131688779-131830928 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    1 phenotype from multigenic genotypes
    10 phenotype references
Mice homozygous for a null allele are viable and fertile with no defect in random or imprinted XCI.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    9
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    1049
  • Tissues
    87
  • cDNA Data
    92
  • Literature Summary
    4
Sequences &
Gene Models
less
  • All Sequences
    92
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 103012 NCBI Gene Model | MGI Sequence Detail 72202 C57BL/6J ±  kb
transcript NR_015505 RefSeq | MGI Sequence Detail 5832 C57BL/6  
polypeptide Q3V1H2 UniProt | EBI | MGI Sequence Detail 85 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 92
    cDNA 92

    Microarray probesets 4
Other
Accession IDs
less
MGI:2442400
References
more
  • Summaries
    All 34
    Developmental Gene Expression 4
    Gene Ontology 3
    Phenotypes 10
  • Earliest
    J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-Le-Grand). 1999 Jul;45(5):737-50
  • Latest
    J:361876 Hasenbein TP, et al., X-linked deletion of Crossfirre, Firre, and Dxz4 in vivo uncovers diverse phenotypes and combinatorial effects on autosomes. Nat Commun. 2024 Dec 5;15(1):10631
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/15/2026
MGI 6.29 		The Jackson Laboratory