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Atrnl1 Gene Detail
Summary
  • Symbol
    Atrnl1
  • Name
    attractin like 1
  • Synonyms
    Alp
  • Feature Type
    protein coding gene
  • IDs
    MGI:2147749
    NCBI Gene: 226255
  • Alliance
  • Transcription Start Sites
    12 TSS
  • Candidate for QTL
    1 QTL
Location &
Maps
more
  • Sequence Map
    Chr19:57599466-58121775 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
  • Genetic Map
    Chromosome 19, 53.31 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    5717 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2147749
protein coding gene Chr19:57599248-58121775 (+)
129S1/SvImJ MGP_129S1SvImJ_G0025275
protein coding gene Chr19:58042687-58600842 (+)
A/J MGP_AJ_G0025251
protein coding gene Chr19:55174989-55707575 (+)
AKR/J MGP_AKRJ_G0025220
protein coding gene Chr19:56917530-57457103 (+)
BALB/cJ MGP_BALBcJ_G0025246
protein coding gene Chr19:55245590-55780806 (+)
C3H/HeJ MGP_C3HHeJ_G0025006
protein coding gene Chr19:57155246-57693160 (+)
C57BL/6NJ MGP_C57BL6NJ_G0025689
protein coding gene Chr19:59440346-59999079 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0023101
protein coding gene Chr19:54082000-54597259 (+)
CAST/EiJ MGP_CASTEiJ_G0024471
protein coding gene Chr19:57201584-57755085 (+)
CBA/J MGP_CBAJ_G0024986
protein coding gene Chr19:62361564-62939652 (+)
DBA/2J MGP_DBA2J_G0025118
protein coding gene Chr19:54942410-55463727 (+)
FVB/NJ MGP_FVBNJ_G0025079
protein coding gene Chr19:54673110-55191467 (+)
LP/J MGP_LPJ_G0025204
protein coding gene Chr19:57893133-58454880 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0025112
protein coding gene Chr19:61598213-62187345 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0025747
protein coding gene Chr19:57130452-57679025 (+)
PWK/PhJ MGP_PWKPhJ_G0024219
protein coding gene Chr19:54926322-55453841 (+)
SPRET/EiJ MGP_SPRETEiJ_G0024022
protein coding gene Chr19:55802697-56350074 (+)
WSB/EiJ MGP_WSBEiJ_G0024541
protein coding gene Chr19:57253345-57794954 (+)



Homology
more
  • Human Ortholog
    ATRNL1, attractin like 1
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    ATRNL1, attractin like 1
  • Synonyms
    ALP, bA338L11.1, bA454H24.1
  • Links
    NCBI Gene ID: 26033
    neXtProt AC: NX_Q5VV63
    UniProt: Q5VV63

  • Chr Location
    10q25.3; chr10:115093365-115948999 (+)  GRCh38

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotypes from 2 alleles in 2 genetic backgrounds
    6 phenotypes from multigenic genotypes
    9 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a null allele exhibit normal coat coloring and normal brain morphology.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000054843 Ensembl Gene Model | MGI Sequence Detail 522310 C57BL/6J ±  kb
transcript ENSMUST00000077282 Ensembl | MGI Sequence Detail 6586 Not Applicable  
polypeptide ENSMUSP00000076514 Ensembl | MGI Sequence Detail 1378 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 82
    cDNA 81
    Primer pair 1

    Microarray probesets 4
Other
Accession IDs
less
MGI:2147571
References
more
  • Summaries
    All 30
    Developmental Gene Expression 1
    Gene Ontology 3
    Phenotypes 9
  • Earliest
    J:85162 Hansen J, et al., A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Proc Natl Acad Sci U S A. 2003 Aug 19;100(17):9918-22
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
03/12/2024
MGI 6.23
The Jackson Laboratory