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Slc39a6
Gene Detail
 Symbol
Name
ID
Slc39a6
solute carrier family 39 (metal ion transporter), member 6
MGI:2147279
Synonyms Ermelin
Feature Type protein coding gene
Genetic Map
Chromosome 18
13.18 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr18:24579881-24603817 bp, - strand
From VEGA annotation of GRCm38

  23937 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:8199  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Slc39a6

Human
homologs
Human Homolog SLC39A6, solute carrier family 39 (zinc transporter), member 6
NCBI Gene ID 25800
neXtProt AC  NX_Q13433
Human Synonyms  LIV-1
Human Chr (Location)  18q12.2; chr18:36108531-36129394 (-)  GRCh38
Alleles
and
phenotypes
All alleles(11) : Gene trapped(5) Targeted(6)
Incidental mutations (data from Mutagenetix , APF )
Gene Ontology
(GO)
classifications
All GO classifications: (18 annotations)
Process cellular zinc ion homeostasis, divalent inorganic cation transport, ...
Component endoplasmic reticulum, integral component of membrane, ...
Function metal ion transmembrane transporter activity, zinc ion transmembrane transporter activity
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (4)    Tissues (4)    Images (1)
Theiler Stages: 22, 23
Assay TypeResults
RNA in situ 4
cDNA source data(78)
External Resources: Allen Institute   GENSAT   GEO   ArrayExpress
Molecular
reagents
All nucleic(79) cDNA(78) Primer pair(1)
Microarray probesets(4)
Other database
links
VEGA Gene ModelOTTMUSG00000033982 (Evidence)
Ensembl Gene ModelENSMUSG00000024270 (Evidence)
Entrez Gene106957 (Evidence)
UniGene21688
DFCITC1577239
DoTSDT.101183203, DT.489387
Consensus CDS ProjectCCDS50239.1
International Mouse Knockout Project StatusSlc39a6
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000033982 VEGA Gene Model | MGI Sequence Detail 23937 C57BL/6J ±  kb
transcript OTTMUST00000085755 VEGA | MGI Sequence Detail 3882 Not Applicable 
polypeptide OTTMUSP00000046356 VEGA | MGI Sequence Detail 765 Not Applicable 

For the selected sequences
All sequences(34) RefSeq(2) UniProt(3)
Polymorphisms SNPs within 2kb(95 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR003689 Zinc/iron permease
Protein Ontology PR:000015133 zinc transporter ZIP6
References (Earliest) J:75677 Suzuki A, et al., Ermelin, an endoplasmic reticulum transmembrane protein, contains the novel HELP domain conserved in eukaryotes. Gene. 2002 Feb 6;284(1-2):31-40
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(34)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/15/2014
MGI 5.18
The Jackson Laboratory