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Gnptg Gene Detail
Summary
  • Symbol
    Gnptg
  • Name
    N-acetylglucosamine-1-phosphotransferase, gamma subunit
  • Feature Type
    protein coding gene
  • IDs
    MGI:2147006
    NCBI Gene: 214505
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:25234317-25240170 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 17, 12.53 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    74 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2147006
protein coding gene Chr17:25233331-25240170 (-)
129S1/SvImJ MGP_129S1SvImJ_G0023345
protein coding gene Chr17:24283339-24290964 (-)
A/J MGP_AJ_G0023304
protein coding gene Chr17:23604993-23610733 (-)
AKR/J MGP_AKRJ_G0023270
protein coding gene Chr17:23694693-23701664 (-)
BALB/cJ MGP_BALBcJ_G0023309
protein coding gene Chr17:23801708-23809282 (-)
C3H/HeJ MGP_C3HHeJ_G0023069
protein coding gene Chr17:24071289-24077820 (-)
C57BL/6NJ MGP_C57BL6NJ_G0023751
protein coding gene Chr17:25344698-25354209 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0021227
protein coding gene Chr17:21066302-21073186 (-)
CAST/EiJ MGP_CASTEiJ_G0022571
protein coding gene Chr17:23920142-23926824 (-)
CBA/J MGP_CBAJ_G0023044
protein coding gene Chr17:26210240-26216765 (-)
DBA/2J MGP_DBA2J_G0023174
protein coding gene Chr17:23190411-23196117 (-)
FVB/NJ MGP_FVBNJ_G0023144
protein coding gene Chr17:22918947-22925834 (-)
LP/J MGP_LPJ_G0023251
protein coding gene Chr17:24576606-24583577 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0023163
protein coding gene Chr17:25871273-25878250 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0023791
protein coding gene Chr17:23982455-23988139 (-)
PWK/PhJ MGP_PWKPhJ_G0022320
protein coding gene Chr17:21953196-21959994 (-)
SPRET/EiJ MGP_SPRETEiJ_G0022138
protein coding gene Chr17:22051460-22060612 (-)
WSB/EiJ MGP_WSBEiJ_G0022634
protein coding gene Chr17:24056715-24062737 (-)



Homology
more
  • Human Ortholog
    GNPTG, N-acetylglucosamine-1-phosphate transferase subunit gamma
  • Vertebrate Orthologs
    9
  • Human Ortholog
    GNPTG, N-acetylglucosamine-1-phosphate transferase subunit gamma
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C16orf27, GNPTAG, LP2537, RJD9
  • Links
    NCBI Gene ID: 84572
    neXtProt AC: NX_Q9UJJ9
    UniProt: Q9UJJ9

  • Chr Location
    16p13.3; chr16:1351899-1363351 (+)  GRCh38.p7

Human Diseases
more
  • Diseases
    1 with human GNPTG associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    10 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Mice homozygous for a knock-out allele show a partial loss of lysosomal enzyme phosphorylation.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 214505 NCBI Gene Model | MGI Sequence Detail 5854 C57BL/6J ±  kb
transcript NM_001346737 RefSeq | MGI Sequence Detail 1301 C57BL/6  
polypeptide Q6S5C2 UniProt | EBI | MGI Sequence Detail 307 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    4 Sequences
  • InterPro Domains
    IPR010506 DMAP1-binding domain
    IPR036607 Glucosidase 2 subunit beta-like
    IPR009011 Mannose-6-phosphate receptor binding domain superfamily
Molecular
Reagents
less
  • All nucleic 7
    cDNA 6
    Primer pair 1

    Microarray probesets 1
Other
Accession IDs
less
MGI:2147005
References
more
  • Summaries
    All 27
    Developmental Gene Expression 1
    Gene Ontology 4
    Phenotypes 10
  • Earliest
    J:86784 Bergstrom DE, et al., Overlapping deletions spanning the proximal two-thirds of the mouse t complex. Mamm Genome. 2003 Dec;14(12):817-29
  • Latest
    J:223557 Idol RA, et al., Neurologic abnormalities in mouse models of the lysosomal storage disorders mucolipidosis II and mucolipidosis III gamma. PLoS One. 2014;9(10):e109768

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory