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AI413582 Gene Detail
Summary
  • Symbol
    AI413582
  • Name
    expressed sequence AI413582
  • Feature Type
    protein coding gene
  • IDs
    MGI:2146839
    NCBI Gene: 106672
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:27782743-27784710 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 17, 14.53 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    22 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2146839
protein coding gene Chr17:27782547-27784730 (-)
129S1/SvImJ MGP_129S1SvImJ_G0023422
protein coding gene Chr17:26875929-26880355 (-)
A/J MGP_AJ_G0023380
protein coding gene Chr17:26025450-26027624 (-)
AKR/J MGP_AKRJ_G0023345
protein coding gene Chr17:26188466-26190640 (-)
BALB/cJ MGP_BALBcJ_G0023385
protein coding gene Chr17:26300542-26302716 (-)
C3H/HeJ MGP_C3HHeJ_G0023146
protein coding gene Chr17:26559135-26561309 (-)
C57BL/6NJ MGP_C57BL6NJ_G0023827
protein coding gene Chr17:27988790-27995151 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0021302
protein coding gene Chr17:23409994-23412136 (-)
CAST/EiJ MGP_CASTEiJ_G0022647
protein coding gene Chr17:26508077-26510243 (-)
CBA/J MGP_CBAJ_G0023120
protein coding gene Chr17:28953692-28955866 (-)
DBA/2J MGP_DBA2J_G0023251
protein coding gene Chr17:25588052-25590212 (-)
FVB/NJ MGP_FVBNJ_G0023221
protein coding gene Chr17:25371277-25373451 (-)
LP/J MGP_LPJ_G0023329
protein coding gene Chr17:27138255-27140429 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0023239
protein coding gene Chr17:28448807-28450981 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0023869
protein coding gene Chr17:26592167-26594341 (-)
PWK/PhJ MGP_PWKPhJ_G0022397
protein coding gene Chr17:24370715-24372888 (-)
SPRET/EiJ MGP_SPRETEiJ_G0022215
protein coding gene Chr17:24593272-24595443 (-)
WSB/EiJ MGP_WSBEiJ_G0022709
protein coding gene Chr17:26579560-26581734 (-)



Homology
more
  • Human Ortholog
    SMIM29, small integral membrane protein 29
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SMIM29, small integral membrane protein 29
  • Synonyms
    C6orf1, LBH
  • Links
    NCBI Gene ID: 221491
    neXtProt AC: NX_Q86T20
    UniProt: Q86T20

  • Chr Location
    6p21.31; chr6:34246380-34249108 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 106672 NCBI Gene Model | MGI Sequence Detail 1968 C57BL/6J ±  kb
transcript NM_001002895 RefSeq | MGI Sequence Detail 653 C57BL/6  
polypeptide Q8R043 UniProt | EBI | MGI Sequence Detail 102 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 7
    cDNA 7

    Microarray probesets 4
Other
Accession IDs
less
MGI:2146945
References
more
  • Summaries
    All 25
    Gene Ontology 1
    Phenotypes 7
  • Earliest
    J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
  • Latest
    J:194116 Flachs P, et al., Interallelic and intergenic incompatibilities of the Prdm9 (Hst1) gene in mouse hybrid sterility. PLoS Genet. 2012;8(11):e1003044

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/05/2021
MGI 6.17
The Jackson Laboratory