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AW549877 Gene Detail
Summary
  • Symbol
    AW549877
  • Name
    expressed sequence AW549877
  • Feature Type
    protein coding gene
  • IDs
    MGI:2146232
    NCBI Gene: 106064
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:3982035-3995744 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 15, 1.84 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    87 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2146232
protein coding gene Chr15:3982035-3995746 (-)
129S1/SvImJ MGP_129S1SvImJ_G0021684
protein coding gene Chr15:846894-860581 (-)
A/J MGP_AJ_G0021644
protein coding gene Chr15:875890-889707 (-)
AKR/J MGP_AKRJ_G0021622
protein coding gene Chr15:861131-874810 (-)
BALB/cJ MGP_BALBcJ_G0021651
protein coding gene Chr15:836241-849960 (-)
C3H/HeJ MGP_C3HHeJ_G0021427
protein coding gene Chr15:868908-882626 (-)
C57BL/6NJ MGP_C57BL6NJ_G0022090
protein coding gene Chr15:934747-948453 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0019628
protein coding gene Chr15:724124-737796 (-)
CAST/EiJ MGP_CASTEiJ_G0020943
protein coding gene Chr15:866418-880149 (-)
CBA/J MGP_CBAJ_G0021396
protein coding gene Chr15:916554-930270 (-)
DBA/2J MGP_DBA2J_G0021520
protein coding gene Chr15:848695-862386 (-)
FVB/NJ MGP_FVBNJ_G0021498
protein coding gene Chr15:799764-813462 (-)
LP/J MGP_LPJ_G0021587
protein coding gene Chr15:829527-843222 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0021524
protein coding gene Chr15:971127-984868 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0022113
protein coding gene Chr15:842630-856320 (-)
PWK/PhJ MGP_PWKPhJ_G0020687
protein coding gene Chr15:856527-870209 (-)
SPRET/EiJ MGP_SPRETEiJ_G0020525
protein coding gene Chr15:909360-925646 (-)
WSB/EiJ MGP_WSBEiJ_G0020999
protein coding gene Chr15:827951-842609 (-)



Homology
more
  • Human Ortholog
    C5orf51, chromosome 5 open reading frame 51
  • Vertebrate Orthologs
    7
  • Human Ortholog
    C5orf51, chromosome 5 open reading frame 51
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 285636
    neXtProt AC: NX_A6NDU8
    UniProt: A6NDU8

  • Chr Location
    5p13.1; chr5:41904313-41921636 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotypes from 1 allele in 1 genetic background
    6 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000041935 Ensembl Gene Model | MGI Sequence Detail 13710 C57BL/6J ±  kb
    transcript ENSMUST00000046633 Ensembl | MGI Sequence Detail 5076 Not Applicable  
    polypeptide ENSMUSP00000038476 Ensembl | MGI Sequence Detail 294 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      1 Sequence
    • InterPro Domains
      IPR037657 UPF0600 protein C5orf51
    Molecular
    Reagents
    less
    • All nucleic 120
      cDNA 120

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGI:2145957
    References
    more
    • Summaries
      All 27
      Developmental Gene Expression 1
      Gene Ontology 1
      Phenotypes 6
    • Earliest
      J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
    • Latest
      J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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    Funding Information
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    last database update
    06/23/2020
    MGI 6.15
    The Jackson Laboratory