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Ttc38 Gene Detail
Summary
  • Symbol
    Ttc38
  • Name
    tetratricopeptide repeat domain 38
  • Feature Type
    protein coding gene
  • IDs
    MGI:2146198
    NCBI Gene: 239570
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:85832306-85858822 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 15, 40.42 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    150 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2146198
protein coding gene Chr15:85832282-85858822 (+)
129S1/SvImJ MGP_129S1SvImJ_G0022197
protein coding gene Chr15:86750876-86785625 (+)
A/J MGP_AJ_G0022156
protein coding gene Chr15:83500749-83527641 (+)
AKR/J MGP_AKRJ_G0022131
protein coding gene Chr15:85968615-85996712 (+)
BALB/cJ MGP_BALBcJ_G0022162
protein coding gene Chr15:83629372-83657921 (+)
C3H/HeJ MGP_C3HHeJ_G0021932
protein coding gene Chr15:85910578-85939140 (+)
C57BL/6NJ MGP_C57BL6NJ_G0022607
protein coding gene Chr15:89991695-90021839 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0020132
protein coding gene Chr15:79819916-79846385 (+)
CAST/EiJ MGP_CASTEiJ_G0021454
protein coding gene Chr15:86718524-86749298 (+)
CBA/J MGP_CBAJ_G0021899
protein coding gene Chr15:92992971-93029065 (+)
DBA/2J MGP_DBA2J_G0022026
protein coding gene Chr15:82963519-82991545 (+)
FVB/NJ MGP_FVBNJ_G0022005
protein coding gene Chr15:82041067-82068715 (+)
LP/J MGP_LPJ_G0022097
protein coding gene Chr15:86909741-86938073 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0022025
protein coding gene Chr15:97650292-97682749 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0022622
protein coding gene Chr15:85973242-86001851 (+)
PWK/PhJ MGP_PWKPhJ_G0021195
protein coding gene Chr15:82979627-83008837 (+)
SPRET/EiJ MGP_SPRETEiJ_G0021029
protein coding gene Chr15:85682697-85714257 (+)
WSB/EiJ MGP_WSBEiJ_G0021503
protein coding gene Chr15:86466969-86498287 (+)



Homology
more
  • Human Ortholog
    TTC38, tetratricopeptide repeat domain 38
  • Vertebrate Orthologs
    10
  • Human Ortholog
    TTC38, tetratricopeptide repeat domain 38
    Orthology source: HomoloGene, HGNC
  • Synonyms
    LL22NC03-5H6.5
  • Links
    NCBI Gene ID: 55020
    neXtProt AC: NX_Q5R3I4
    UniProt: Q5R3I4

  • Chr Location
    22q13.31; chr22:46267964-46294008 (+)  GRCh38.p7

Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    24 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000035944 Ensembl Gene Model | MGI Sequence Detail 26517 C57BL/6J ±  kb
transcript ENSMUST00000146088 Ensembl | MGI Sequence Detail 3749 Not Applicable  
polypeptide ENSMUSP00000114504 Ensembl | MGI Sequence Detail 465 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 72
    cDNA 72

    Microarray probesets 5
References
more
  • Summaries
    All 44
    Diseases 1
    Phenotypes 24
  • Earliest
    J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
  • Latest
    J:285676 Suzuki A, et al., Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis. Mech Dev. 2018 Apr;150:21-27

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
04/13/2021
MGI 6.16
The Jackson Laboratory