Kctd12
Gene Detail

Symbol

Name
ID

BioType Conflict

Kctd12
potassium channel tetramerisation domain containing 12
MGI:2145823

Synonyms

Pfet1, Pfetin

Feature Type

protein coding gene

Genetic Map

Chromosome 14
51.55 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)

Sequence Map

Chr14:102976581-102982637 bp, - strand From VEGA annotation of GRCm38   6057 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate
homology

HomoloGene:16316  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 western clawed frog; 2 zebrafish

Human
homologs

Human Homolog		KCTD12, potassium channel tetramerization domain containing 12
NCBI Gene ID		115207
neXtProt AC		NX_Q96CX2
Human Synonyms		C13orf2, PFET1, PFETIN
Human Chr (Location)		13q22.3; chr13:76880169-76886405 (-)  GRCh38

Interactions

Kctd12 interacts with 100 markers (Mir7-2, Mir7b, Mir9-1, ...)

View All

Gene Ontology
(GO)
classifications

All GO classifications: (12 annotations)

Process	protein homooligomerization, regulation of G-protein coupled receptor protein signaling pathway
Component	cell junction, extracellular vesicular exosome, ...
Function	poly(A) RNA binding, protein binding

External Resources: FuncBase

Expression

Literature Summary: (5 records)

Data Summary: Results (47)    Tissues (33)    Images (2)    Tissue x Stage Matrix (view)

Assay Type	Results
Immunohistochemistry	11
RNA in situ	2
Northern blot	34

cDNA source data(18)
External Resources: Allen Institute   GENSAT   GEO   Expression Atlas

Molecular
reagents

All nucleic(22) cDNA(18) Primer pair(3) Other(1)
Microarray probesets(5)

Other database
links

VEGA Gene Model	OTTMUSG00000044960 (Evidence)
Ensembl Gene Model	ENSMUSG00000098557 (Evidence), ENSMUSG00000104139 (Evidence)
Entrez Gene	239217 (Evidence)
DFCI	TC1597453, TC1584642
DoTS	DT.97350280, DT.94157500
NIA Mouse Gene Index	U035872
Consensus CDS Project	CCDS70611.1
International Mouse Knockout Project Status	Kctd12

Sequences

Length	Strain/Species
genomic	OTTMUSG00000044960	VEGA Gene Model | MGI Sequence Detail	6057	C57BL/6J
transcript	OTTMUST00000118155	VEGA | MGI Sequence Detail	6057	Not Applicable
polypeptide	OTTMUSP00000065973	VEGA | MGI Sequence Detail	327	Not Applicable

All sequences(47) RefSeq(2) UniProt(5)

Polymorphisms

SNPs within 2kb(9 from dbSNP Build 137)

Protein-related
information

Resource	ID	Description
InterPro	IPR011333	BTB/POZ fold
InterPro	IPR000210	BTB/POZ-like
InterPro	IPR003131	Potassium channel tetramerisation-type BTB domain
Protein Ontology	PR:000030477	BTB/POZ domain-containing protein KCTD12

References

(Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:205051 Miller JA, et al., Conserved molecular signatures of neurogenesis in the hippocampal subgranular zone of rodents and primates. Development. 2013 Nov;140(22):4633-44
All references(32)

Other
accession IDs

MGI:2145763