Asb13 MGI Mouse Gene Detail - MGI:2145525 - ankyrin repeat and SOCS box-containing 13

Symbol

Asb13
Name

ankyrin repeat and SOCS box-containing 13
Synonyms

2210015B19Rik, 6430573K02Rik

Feature Type

protein coding gene
IDs

MGI:2145525
NCBI Gene: 142688
Alliance

gene page
Transcription Start Sites

3 TSS

Sequence Map

Chr13:3684032-3703822 bp, + strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 13, 2.03 cM
Mapping Data

2 experiments

SNPs within 2kb

147 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2145525	protein coding gene	Chr13:3683589-3703822 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0020195	protein coding gene	Chr13:114327-145313 (+)
A/J	MGP_AJ_G0020151	protein coding gene	Chr13:225942-248856 (+)
AKR/J	MGP_AKRJ_G0020126	protein coding gene	Chr13:212466-230117 (+)
BALB/cJ	MGP_BALBcJ_G0020134	protein coding gene	Chr13:211024-235152 (+)
C3H/HeJ	MGP_C3HHeJ_G0019938	protein coding gene	Chr13:279457-298904 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0020581	protein coding gene	Chr13:182921-201569 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0018193	protein coding gene	Chr13:166699-186615 (+)
CAST/EiJ	MGP_CASTEiJ_G0019478	protein coding gene	Chr13:130225-152020 (+)
CBA/J	MGP_CBAJ_G0019905	protein coding gene	Chr13:203514-221292 (+)
DBA/2J	MGP_DBA2J_G0020022	protein coding gene	Chr13:126908-147117 (+)
FVB/NJ	MGP_FVBNJ_G0020007	protein coding gene	Chr13:117960-136111 (+)
LP/J	MGP_LPJ_G0020096	protein coding gene	Chr13:180055-198414 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0020043	protein coding gene	Chr13:212874-238268 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0020610	protein coding gene	Chr13:192839-213752 (+)
PWK/PhJ	MGP_PWKPhJ_G0019240	protein coding gene	Chr13:181521-206611 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0019045	protein coding gene	Chr13:236141-257535 (+)
WSB/EiJ	MGP_WSBEiJ_G0019536	protein coding gene	Chr13:119611-140962 (+)

Human Ortholog

ASB13, ankyrin repeat and SOCS box containing 13

Vertebrate Orthologs

5

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

ASB13, ankyrin repeat and SOCS box containing 13
Links

HGNC:19765

NCBI Gene ID: 79754

neXtProt AC: NX_Q8WXK3

UniProt: Q8WXK3
Chr Location

10p15.1; chr10:5638867-5666595 (-) GRCh38

MGI Vertebrate Homology

Asb13 stringent orthology
1 human;1 mouse;1 rat;3 zebrafish
HCOP

vertebrate homology predictions: ASB13
Gene Tree

Asb13

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Phenotype Summary

5 phenotype references

All Mutations and Alleles

6
Endonuclease-mediated

2
Gene trapped

2
Targeted

2
Incidental Mutations

Mutagenetix , APF
Find Mice (IMSR)

25 strains or lines available

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All GO Annotations

3
GO References

3

Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

carbohydrate derivative metabolism	cell differentiation	cell population proliferation	cellular component organization	DNA-templated transcription	establishment of localization	homeostatic process	immune system process	lipid metabolic process	programmed cell death	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

706
cDNA Data

32

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas
Other Vertebrate Links

Xenbase asb13

ZFIN asb13b

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All Sequences

39
RefSeq

5
UniProt

1
CCDS

CCDS36582.1

Ensembl

ENSMUSG00000033781 (Evidence)
NCBI Gene

142688

			Length	Strain/Species	Flank
genomic	ENSMUSG00000033781	Ensembl Gene Model \| MGI Sequence Detail	19791	C57BL/6J	± kb
transcript	ENSMUST00000042288	Ensembl \| MGI Sequence Detail	4453	Not Applicable
polypeptide	ENSMUSP00000046476	Ensembl \| MGI Sequence Detail	278	Not Applicable

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UniProt

1 Sequence
Protein Ontology

PR:000004345 ankyrin repeat and SOCS box protein 13

(term hierarchy)
InterPro Domains

IPR002110 Ankyrin repeat

IPR037334 Ankyrin repeat and SOCS box protein 13, SOCS box domain

IPR036770 Ankyrin repeat-containing domain superfamily

IPR001496 SOCS box domain

IPR036036 SOCS box-like domain superfamily

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All nucleic 32

cDNA 32

Microarray probesets 5

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MGI:1919596

Summaries

All 31

Gene Ontology 3

Phenotypes 5
Earliest

J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
Latest

J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

TSS for Asb13:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr118205	Chr13:3684012-3684027 (+)	-12 bp
Tssr118206	Chr13:3684034-3684108 (+)	39 bp
Tssr118207	Chr13:3702777-3702783 (+)	18,748 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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