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Serpinb6c
Gene Detail
 Symbol
Name
ID
Serpinb6c
serine (or cysteine) peptidase inhibitor, clade B, member 6c
MGI:2145481
Synonyms ovalbumin, Spi3C, SPIC
Feature Type protein coding gene
Genetic Map
Chromosome 13
13.99 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr13:33879816-33905170 bp, - strand
From VEGA annotation of GRCm38

  25355 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
Protein SuperFamily: serpin
Gene Tree: Serpinb6c
Mutations,
alleles, and
phenotypes
All mutations/alleles(1) : Targeted(1)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Serpinb6c interacts with 37 markers (Mir16-2, Mir25, Mir32, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (4 annotations)
Process negative regulation of endopeptidase activity, regulation of proteolysis
Component cellular_component
Function serine-type endopeptidase inhibitor activity
External Resources: FuncBase
Expression
Literature Summary: (3 records)
Data Summary: Results (23)    Tissues (15)    Images (6)
Theiler Stages: 20, 22, 23, 25, 28
Assay TypeResults
RNA in situ 1
RT-PCR 22
cDNA source data(13)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(17) Genomic(1) cDNA(13) Primer pair(3)
Microarray probesets(2)
Other database
links
VEGA Gene ModelOTTMUSG00000000721 (Evidence)
Ensembl Gene ModelENSMUSG00000052180 (Evidence)
Entrez Gene97848 (Evidence)
UniGene272188
DFCITC1587970, TC1596255
DoTSDT.101279072, DT.94343496
NIA Mouse Gene IndexU221380
Consensus CDS ProjectCCDS49227.1
International Mouse Knockout Project StatusSerpinb6c
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000000721 VEGA Gene Model | MGI Sequence Detail 25355 C57BL/6J ±  kb
transcript OTTMUST00000001354 VEGA | MGI Sequence Detail 1325 Not Applicable 
polypeptide OTTMUSP00000000637 VEGA | MGI Sequence Detail 378 Not Applicable 

For the selected sequences
All sequences(27) RefSeq(4) UniProt(3)
Polymorphisms SNPs within 2kb(28 from dbSNP Build 137)    SNPs within 2kb including multiple locations(30)
Protein-related
information
ResourceIDDescription
InterPro IPR023795 Protease inhibitor I4, serpin, conserved site
InterPro IPR023796 Serpin domain
InterPro IPR000215 Serpin family
References (Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(26)
Other
accession IDs
MGI:2145482

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
08/19/2014
MGI 5.19
The Jackson Laboratory