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Nhlrc1 Gene Detail
Summary
  • Symbol
    Nhlrc1
  • Name
    NHL repeat containing 1
  • Synonyms
    B230309E09Rik, EPM2B, Malin
  • Feature Type
    protein coding gene
  • IDs
    MGI:2145264
    NCBI Gene: 105193
  • Gene Overview
    MyGene.info: NHLRC1
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:47012557-47014850 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 13, 24.50 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    64 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2145264
protein coding gene Chr13:47012557-47014850 (-)
129S1/SvImJ MGP_129S1SvImJ_G0020517
protein coding gene Chr13:45818523-45820805 (-)
A/J MGP_AJ_G0020471
protein coding gene Chr13:44219119-44221401 (-)
AKR/J MGP_AKRJ_G0020448
protein coding gene Chr13:45432343-45434635 (-)
BALB/cJ MGP_BALBcJ_G0020467
protein coding gene Chr13:44425282-44427564 (-)
C3H/HeJ MGP_C3HHeJ_G0020266
protein coding gene Chr13:45296855-45299137 (-)
C57BL/6NJ MGP_C57BL6NJ_G0020900
protein coding gene Chr13:47199382-47201674 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0018485
protein coding gene Chr13:42263705-42266007 (-)
CAST/EiJ MGP_CASTEiJ_G0019781
protein coding gene Chr13:45237591-45239895 (-)
CBA/J MGP_CBAJ_G0020227
protein coding gene Chr13:49159000-49161282 (-)
DBA/2J MGP_DBA2J_G0020349
protein coding gene Chr13:43773476-43775758 (-)
FVB/NJ MGP_FVBNJ_G0020328
protein coding gene Chr13:43291303-43293585 (-)
LP/J MGP_LPJ_G0020424
protein coding gene Chr13:46039226-46041508 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0020357
protein coding gene Chr13:48984732-48987014 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0020943
protein coding gene Chr13:45132580-45134862 (-)
PWK/PhJ MGP_PWKPhJ_G0019537
protein coding gene Chr13:43906371-43908663 (-)
SPRET/EiJ MGP_SPRETEiJ_G0019365
protein coding gene Chr13:43805129-43807416 (-)
WSB/EiJ MGP_WSBEiJ_G0019843
protein coding gene Chr13:45442974-45445266 (-)



Homology
more
  • Human Ortholog
    NHLRC1, NHL repeat containing E3 ubiquitin protein ligase 1
  • Vertebrate Orthologs
    9
  • Human Ortholog
    NHLRC1, NHL repeat containing E3 ubiquitin protein ligase 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    bA204B7.2, EPM2A, EPM2B, MALIN
  • Links
    NCBI Gene ID: 378884
    neXtProt AC: NX_Q6VVB1
    UniProt: Q6VVB1

  • Chr Location
    6p22.3; chr6:18120487-18122620 (-)  GRCh38.p7

Human Diseases
more
  • Diseases
    1 with Nhlrc1 mouse models; 1 with human NHLRC1 associations

Human Disease Mouse Models
      
IDs
View 2 models
Click on a disease name to see all genes associated with that disease.

  • Mutations/Alleles
    2 with disease annotations
  • References
    3 with disease annotations
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    30 phenotypes from 3 alleles in 4 genetic backgrounds
    7 phenotypes from multigenic genotypes
    1 images
    18 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Mice homozygous for a knock-out allele exhibit accumulation of Lafora bodies and total glycogen levels in the heart muscle, skeletal muscle, and brain.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 105193 NCBI Gene Model | MGI Sequence Detail 2294 C57BL/6J ±  kb
transcript NM_175340 RefSeq | MGI Sequence Detail 2308 C57BL/6  
polypeptide Q8BR37 UniProt | EBI | MGI Sequence Detail 401 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 13
    cDNA 13

    Microarray probesets 3
References
more
  • Summaries
    All 46
    Diseases 3
    Gene Ontology 5
    Phenotypes 18
  • Earliest
    J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
  • Latest
    J:262451 Nitschke F, et al., Abnormal glycogen chain length pattern, not hyperphosphorylation, is critical in Lafora disease. EMBO Mol Med. 2017 Jul;9(7):906-917

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory