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Lhfpl2
Gene Detail
Symbol

Name
ID
Lhfpl2
lipoma HMGIC fusion partner-like 2
MGI:2145236
Synonyms
mKIAA0206, vgim
Feature Type
protein coding gene
Genetic Map
Chromosome 13
49.03 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr13:94057796-94195409 bp, + strand
From VEGA annotation of GRCm38

  137614 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:4222  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Protein SuperFamily: Lipoma HMGIC fusion partner precursor
Gene Tree: Lhfpl2

Human
homologs
Human Homolog LHFPL2, lipoma HMGIC fusion partner-like 2
NCBI Gene ID 10184
neXtProt AC  NX_Q6ZUX7
Human Chr (Location)  5q14.1; chr5:78485215-78648825 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(4) : Gene trapped(1) Spontaneous(1) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
 
Females homozygous for a spontaneous point mutation have a completely closed vagina, soft swelling of the perineum and buildup of viscous fluid in the uteri.
 
Interactions
Lhfpl2 interacts with 327 markers (Mir1b, Mir7-1, Mir7-2, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (4 annotations)
Process biological_process
Component integral component of membrane, membrane
Function molecular_function
External Resources: FuncBase
Expression
cDNA source data(10)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(11) cDNA(11)
Microarray probesets(7)
Other database
links
VEGA Gene ModelOTTMUSG00000027714 (Evidence)
Ensembl Gene ModelENSMUSG00000045312 (Evidence)
Entrez Gene218454 (Evidence)
DFCITC1613815, TC1601458, TC1581372, TC1716242, TC1637199
DoTSDT.55115168, DT.531661, DT.91573918, DT.40135636, DT.101737647
NIA Mouse Gene IndexU015126
Consensus CDS ProjectCCDS26692.1
International Mouse Knockout Project StatusLhfpl2
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000027714 VEGA Gene Model | MGI Sequence Detail 137614 C57BL/6J ±  kb
transcript OTTMUST00000068582 VEGA | MGI Sequence Detail 4348 Not Applicable 
polypeptide OTTMUSP00000034709 VEGA | MGI Sequence Detail 222 Not Applicable 

For the selected sequences
All sequences(66) RefSeq(2) UniProt(5)
Polymorphisms
SNPs within 2kb(1096 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR019372 Lipoma HMGIC fusion partner-like protein
Protein Ontology PR:000009786 lipoma HMGIC fusion partner-like 2 protein
References
(Earliest) J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
(Latest) J:176116 Fairfield H, et al., Mutation discovery in mice by whole exome sequencing. Genome Biol. 2011 Sep 14;12(9):R86
All references(31)
Other
accession IDs
MGI:2145409, MGI:4837107

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/18/2014
MGI 5.20
The Jackson Laboratory