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Cog5
Gene Detail
 Symbol
Name
ID
Cog5
component of oligomeric golgi complex 5
MGI:2145130
Synonyms 5430405C01Rik, GOLTC1, GTC90
Feature Type protein coding gene
Genetic Map
Chromosome 12
13.68 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr12:31654869-31937630 bp, + strand
From NCBI annotation of GRCm38

  282762 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:42221  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Cog5

Human
homologs
Human Homolog COG5, component of oligomeric golgi complex 5
NCBI Gene ID 10466
neXtProt AC  NX_Q9UP83
Human Synonyms  CDG2I, GOLTC1, GTC90
Human Chr (Location)  7q31; chr7:107201744-107564514 (-)  GRCh38
Disease Associations  (1) Diseases Associated with Human COG5
Mutations,
alleles, and
phenotypes
All mutations/alleles(109) : Gene trapped(109)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Cog5 interacts with 120 markers (Mir7-1, Mir9-1, Mir9-2, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (10 annotations)
Process inter-Golgi cisterna vesicle-mediated transport, intra-Golgi vesicle-mediated transport, ...
Component cytoplasm, Golgi apparatus, ...
Function molecular_function
External Resources: FuncBase
Expression
cDNA source data(56)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(56) cDNA(56)
Microarray probesets(6)
Other database
links
Ensembl Gene ModelENSMUSG00000035933 (Evidence)
Entrez Gene238123 (Evidence)
UniGene173068
DFCITC1601703, TC1607167, TC1639941, TC1693807, TC1713485
NIA Mouse Gene IndexU013841
Consensus CDS ProjectCCDS49046.1
International Mouse Knockout Project StatusCog5
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 238123 NCBI Gene Model | MGI Sequence Detail 282762 C57BL/6J ±  kb
transcript NM_001163126 RefSeq | MGI Sequence Detail 2997 Not Specified 
polypeptide Q8C0L8 UniProt | EBI | MGI Sequence Detail 829 Not Applicable 

For the selected sequences
All sequences(30) RefSeq(6) UniProt(1)
Polymorphisms SNPs within 2kb(1221 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR019465 Conserved oligomeric Golgi complex subunit 5
Protein Ontology PR:000005688 conserved oligomeric Golgi complex subunit 5
Graphical View of Protein Domain Structure
References (Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(34)
Other
accession IDs
MGI:2145129

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/09/2014
MGI 5.19
The Jackson Laboratory