About   Help   FAQ
Cog5 Gene Detail
Summary
  • Symbol
    Cog5
  • Name
    component of oligomeric golgi complex 5
  • Synonyms
    5430405C01Rik, GOLTC1, GTC90
  • Feature Type
    protein coding gene
  • IDs
    MGI:2145130
    NCBI Gene: 238123
  • Gene Overview
    MyGene.info: COG5
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr12:31654869-31937630 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 12, 13.68 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1212 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2145130
protein coding gene Chr12:31654868-31937631 (.)
129S1/SvImJ MGP_129S1SvImJ_G0019665
protein coding gene Chr12:29620447-29922046 (+)
A/J MGP_AJ_G0019632
protein coding gene Chr12:28774861-29067186 (+)
AKR/J MGP_AKRJ_G0019603
protein coding gene Chr12:29697127-29990911 (+)
BALB/cJ MGP_BALBcJ_G0019609
protein coding gene Chr12:28999978-29290716 (+)
C3H/HeJ MGP_C3HHeJ_G0019413
protein coding gene Chr12:29566947-29866594 (+)
C57BL/6NJ MGP_C57BL6NJ_G0020056
protein coding gene Chr12:30546605-30851460 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0017681
protein coding gene Chr12:28063765-28356619 (+)
CAST/EiJ MGP_CASTEiJ_G0018968
protein coding gene Chr12:24566839-24862540 (+)
CBA/J MGP_CBAJ_G0019385
protein coding gene Chr12:31531891-31844800 (+)
DBA/2J MGP_DBA2J_G0019498
protein coding gene Chr12:28607531-28890056 (+)
FVB/NJ MGP_FVBNJ_G0019489
protein coding gene Chr12:28401412-28685675 (+)
LP/J MGP_LPJ_G0019568
protein coding gene Chr12:29713655-30013811 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0019524
protein coding gene Chr12:31168753-31487313 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0020096
protein coding gene Chr12:29225698-29521126 (+)
PWK/PhJ MGP_PWKPhJ_G0018735
protein coding gene Chr12:23338947-23632480 (+)
SPRET/EiJ MGP_SPRETEiJ_G0018523
protein coding gene Chr12:23810304-24105668 (+)
WSB/EiJ MGP_WSBEiJ_G0019018
protein coding gene Chr12:29457507-29756727 (+)



Homology
more
  • Human Ortholog
    COG5, component of oligomeric golgi complex 5
  • Vertebrate Orthologs
    10
  • Human Ortholog
    COG5, component of oligomeric golgi complex 5
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CDG2I, GOLTC1, GTC90
  • Links
    NCBI Gene ID: 10466
    neXtProt AC: NX_Q9UP83
    UniProt: Q9UP83

  • Chr Location
    7q22.3; chr7:107201743-107564514 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 42221
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: COG5
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000035933 Ensembl Gene Model | MGI Sequence Detail 282762 C57BL/6J ±  kb
transcript ENSMUST00000036862 Ensembl | MGI Sequence Detail 2997 Not Applicable  
polypeptide ENSMUSP00000044797 Ensembl | MGI Sequence Detail 829 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 58
    cDNA 58

    Microarray probesets 6
Other
Accession IDs
less
MGI:2145129
References
more
  • Summaries
    All 33
    Gene Ontology 5
    Phenotypes 6
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
11/13/2018
MGI 6.13
The Jackson Laboratory