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Spata7
Gene Detail
 Symbol
Name
ID
Spata7
spermatogenesis associated 7
MGI:2144877
Synonyms B230306G18Rik, HSD3
Feature Type protein coding gene
Genetic Map
Chromosome 12
49.88 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr12:98628157-98669815 bp, + strand
From VEGA annotation of GRCm38

  41659 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:10189  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Spata7

Human
homologs
Human Homolog SPATA7, spermatogenesis associated 7
NCBI Gene ID 55812
neXtProt AC  NX_Q9P0W8
Human Synonyms  HEL-S-296, HSD3, HSD-3.1, LCA3
Human Chr (Location)  14q31.3; chr14:88385644-88470350 (+)  GRCh38
Disease Associations  (1) Diseases Associated with Human SPATA7
Alleles
and
phenotypes
All alleles(1) : Targeted(1)
Gene Ontology
(GO)
classifications
All GO classifications: (4 annotations)
Process response to stimulus, visual perception
Component cellular_component
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (10)    Tissues (5)   
Theiler Stages: 26, 28
Assay TypeResults
RNA in situ 10
cDNA source data(31)
External Resources: Allen Institute   GEO   ArrayExpress
Molecular
reagents
All nucleic(32) cDNA(32)
Microarray probesets(2)
Other database
links
VEGA Gene ModelOTTMUSG00000023264 (Evidence)
Ensembl Gene ModelENSMUSG00000021007 (Evidence)
Entrez Gene104871 (Evidence)
UniGene210053
DFCITC1580577, TC1605965, TC1624600
DoTSDT.110952580, DT.50316109, DT.91384411, DT.94142279, DT.94237624
NIA Mouse Gene IndexU040768
Consensus CDS ProjectCCDS26097.1
International Mouse Knockout Project StatusSpata7
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000023264 VEGA Gene Model | MGI Sequence Detail 41659 C57BL/6J ±  kb
transcript OTTMUST00000056323 VEGA | MGI Sequence Detail 2052 Not Applicable 
polypeptide OTTMUSP00000027056 VEGA | MGI Sequence Detail 582 Not Applicable 

For the selected sequences
All sequences(60) RefSeq(14) UniProt(3)
Polymorphisms SNPs within 2kb(193 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
Protein Ontology PR:000015495 spermatogenesis-associated protein 7
References (Earliest) J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
(Latest) J:150892 Wang H, et al., Mutations in SPATA7 cause Leber congenital amaurosis and juvenile retinitis pigmentosa. Am J Hum Genet. 2009 Mar;84(3):380-7
All references(28)
Other
accession IDs
MGI:2442828

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
04/08/2014
MGI 5.17
The Jackson Laboratory