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Spata7
Gene Detail
Symbol

Name
ID
Spata7
spermatogenesis associated 7
MGI:2144877
Synonyms
B230306G18Rik, HSD3
Feature Type
protein coding gene
Genetic Map
Chromosome 12
49.88 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr12:98628157-98669815 bp, + strand
From VEGA annotation of GRCm38

  41659 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:10189  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog

HCOP human homology predictions: SPATA7
Gene Tree: Spata7

Human
homologs
SPATA7, spermatogenesis associated 7
Orthology source: HomoloGene, HGNC

IDs:
NCBI Gene ID: 55812
neXtProt AC: NX_Q9P0W8

Human Synonyms: HEL-S-296, HSD3, HSD-3.1, LCA3

Human Chr (Location): 14q31.3; chr14:88385638-88470350 (+)  GRCh38.p2

Disease Associations: (1) Diseases Associated with Human SPATA7

Mutations,
alleles, and
phenotypes
All mutations/alleles(2) : Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Spata7 interacts with 50 markers (Mir29a, Mir30a, Mir30b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (13 annotations)
Process photoreceptor cell maintenance, protein localization to photoreceptor connecting cilium, ...
Component axoneme, cell projection, ...
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (10)    Tissues (6)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 10
cDNA source data(31)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase spata7    NEW 
Molecular
reagents
All nucleic(32) cDNA(32)
Microarray probesets(2)
Other database
links
VEGA Gene Model OTTMUSG00000023264 (Evidence)
Ensembl Gene Model ENSMUSG00000021007 (Evidence)
Entrez Gene 104871 (Evidence)
UniGene 210053
DFCI TC1605965, TC1580577, TC1624600
DoTS DT.94142279, DT.91384411, DT.110952580, DT.50316109, DT.94237624
NIA Mouse Gene Index U040768
Consensus CDS Project CCDS26097.1, CCDS70413.1
International Mouse Phenotyping Consortium Status Spata7
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000023264 VEGA Gene Model | MGI Sequence Detail 41659 C57BL/6J ±  kb
transcript OTTMUST00000056323 VEGA | MGI Sequence Detail 2052 Not Applicable 
polypeptide OTTMUSP00000027056 VEGA | MGI Sequence Detail 582 Not Applicable 

For the selected sequences
All sequences(62) RefSeq(16) UniProt(3)
Polymorphisms
SNPs within 2kb(193 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
Protein Ontology PR:000015495 spermatogenesis-associated protein 7
References
(Earliest) J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
(Latest) J:216279 Eblimit A, et al., Spata7 is a retinal ciliopathy gene critical for correct RPGRIP1 localization and protein trafficking in the retina. Hum Mol Genet. 2014 Nov 14;
All references(30)
Other
accession IDs
MGI:2442828

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
05/20/2015
MGI 5.22
The Jackson Laboratory