Gm11545 Pseudogene Detail

Summary

• Symbol
  Gm11545
• Name
  predicted gene 11545
• Synonyms
  C86086

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:2144683
  NCBI Gene: 217122
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr11:94647802-94648589 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 58.93 cM

Strain
Comparison

• SNPs within 2kb
  164 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2144683	pseudogene	Chr11:94645955-94652023 (-)
129S1/SvImJ	ENSMUSG00200053743	pseudogene	Chr11:91891070-91891862 (-)
A/J	ENSMUSG00195009741	pseudogene	Chr11:91629212-91630000 (-)
AKR/J	ENSMUSG00220052351	pseudogene	Chr11:91888135-91888923 (-)
BALB/cJ	ENSMUSG00180052496	pseudogene	Chr11:91859877-91860664 (-)
C3H/HeJ	ENSMUSG00175052510	pseudogene	Chr11:91888783-91889571 (-)
C57BL/6NJ	ENSMUSG00215054132	pseudogene	Chr11:91464073-91464860 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037103	pseudogene	Chr11:90478653-90479418 (-)
CAST/EiJ	ENSTCUG00005017489	pseudogene	Chr11:91320361-91321148 (-)
CBA/J	ENSMUSG00210041972	pseudogene	Chr11:91592200-91592988 (-)
DBA/2J	ENSMUSG00185052766	pseudogene	Chr11:91912793-91913580 (-)
FVB/NJ	ENSMUSG00205050655	pseudogene	Chr11:91791848-91792635 (-)
JF1/MsJ	ENSUMUG00000055426	pseudogene	Chr11:92242809-92243598 (-)
LP/J	ENSMUSG00230051456	pseudogene	Chr11:92974321-92975113 (-)
NOD/ShiLtJ	ENSMUSG00190051987	pseudogene	Chr11:91953621-91954408 (-)
NZO/HlLtJ	ENSMUSG00225053418	pseudogene	Chr11:95020553-95021340 (-)
PWK/PhJ	ENSLUMG00010035101	pseudogene	Chr11:91791812-91792599 (-)
SPRET/EiJ	ENSMSPG00010029320	pseudogene	Chr11:92291142-92291932 (-)
WSB/EiJ	ENSIUOG00005051125	pseudogene	Chr11:91736186-91736978 (-)

Homology

• Gene Tree
  Gm11545
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Gm11545
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  618
• Tissues
  19
• cDNA Data
  12
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  42
• RefSeq
  4
• UniProt
  2

• Ensembl
  ENSMUSG00000075611 (Evidence)
• NCBI Gene
  217122

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000075611	Ensembl Gene Model | MGI Sequence Detail	788	C57BL/6J
transcript	ENSMUST00000146507	Ensembl | MGI Sequence Detail	375	Not Applicable
polypeptide	NP_001099031	RefSeq | MGI Sequence Detail	167	C57BL/6

Protein
Information

• UniProt
  2 Sequences
• InterPro Domains
  IPR021684 WW domain-binding protein 1-like

Molecular
Reagents

• All nucleic 13

  cDNA 12

  Primer pair 1

  Antibodies 1

  
  

  Microarray probesets 2

References

• Summaries
  All 15

  Developmental Gene Expression 1

  Phenotypes 1
• Earliest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
• Latest
  J:294205 Kim J, et al., Identification of a novel embryo-prevalent gene, Gm11545, involved in preimplantation embryogenesis in mice. FASEB J. 2019 Oct;33(10):11326-11337