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Cnot6 Gene Detail
Summary
  • Symbol
    Cnot6
  • Name
    CCR4-NOT transcription complex, subunit 6
  • Synonyms
    A230103N10Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2144529
    NCBI Gene: 104625
  • Gene Overview
    MyGene.info: CNOT6
  • Alliance
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:49671503-49712723 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 11, 29.76 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    60 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2144529
protein coding gene Chr11:49671497-49714004 (-)
129S1/SvImJ MGP_129S1SvImJ_G0018236
protein coding gene Chr11:48810670-48856154 (-)
A/J MGP_AJ_G0018204
protein coding gene Chr11:46928999-46980961 (-)
AKR/J MGP_AKRJ_G0018174
protein coding gene Chr11:48434424-48483080 (-)
BALB/cJ MGP_BALBcJ_G0018174
protein coding gene Chr11:47213915-47260279 (-)
C3H/HeJ MGP_C3HHeJ_G0017987
protein coding gene Chr11:48432512-48477374 (-)
C57BL/6NJ MGP_C57BL6NJ_G0018625
protein coding gene Chr11:50264194-50307615 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0016277
protein coding gene Chr11:44554941-44597015 (-)
CAST/EiJ MGP_CASTEiJ_G0017549
protein coding gene Chr11:48396164-48440115 (-)
CBA/J MGP_CBAJ_G0017962
protein coding gene Chr11:52600660-52646441 (-)
DBA/2J MGP_DBA2J_G0018069
protein coding gene Chr11:46745268-46786740 (-)
FVB/NJ MGP_FVBNJ_G0018063
protein coding gene Chr11:46361152-46402619 (-)
LP/J MGP_LPJ_G0018144
protein coding gene Chr11:49140731-49188560 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0018088
protein coding gene Chr11:54144762-54189586 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0018669
protein coding gene Chr11:48534889-48578783 (-)
PWK/PhJ MGP_PWKPhJ_G0017327
protein coding gene Chr11:47129158-47170789 (-)
SPRET/EiJ MGP_SPRETEiJ_G0017122
protein coding gene Chr11:48235505-48277858 (-)
WSB/EiJ MGP_WSBEiJ_G0017602
protein coding gene Chr11:48179250-48222640 (-)



Homology
more
  • Human Ortholog
    CNOT6, CCR4-NOT transcription complex subunit 6
  • Vertebrate Orthologs
    10
  • Human Ortholog
    CNOT6, CCR4-NOT transcription complex subunit 6
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CCR4, Ccr4a
  • Links
    NCBI Gene ID: 57472
    neXtProt AC: NX_Q9ULM6
    UniProt: Q9ULM6

  • Chr Location
    5q35.3; chr5:180494373-180578405 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotypes from 1 allele in 1 genetic background
    16 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000020362 Ensembl Gene Model | MGI Sequence Detail 41221 C57BL/6J ±  kb
    transcript ENSMUST00000145353 Ensembl | MGI Sequence Detail 5736 Not Applicable  
    polypeptide ENSMUSP00000121239 Ensembl | MGI Sequence Detail 557 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 19
      Genomic 1
      cDNA 17
      Primer pair 1

      Microarray probesets 7
    Other
    Accession IDs
    less
    MGI:2143972
    References
    more
    • Summaries
      All 45
      Developmental Gene Expression 4
      Gene Ontology 2
      Phenotypes 16
    • Earliest
      J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
    • Latest
      J:238760 Dominick G, et al., mTOR regulates the expression of DNA damage response enzymes in long-lived Snell dwarf, GHRKO, and PAPPA-KO mice. Aging Cell. 2017 Feb;16(1):52-60

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
    Citing These Resources
    Funding Information
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    last database update
    11/06/2018
    MGI 6.13
    The Jackson Laboratory