Jmjd4
Gene Detail

Symbol Name ID

Jmjd4 jumonji domain containing 4 MGI:2144404

Feature Type

protein coding gene

Genetic Map

Chromosome 11

37.71 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)

Sequence Map

Chr11:59450045-59458567 bp, + strand From VEGA annotation of GRCm38   8523 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:11306  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Jmjd4

Human homologs

Human Homolog		JMJD4, jumonji domain containing 4
NCBI Gene ID		65094
neXtProt AC		NX_Q9H9V9
Human Chr (Location)		1q42.13; chr1:227918890-227923112 (-)  GRCh37.p10

Alleles and phenotypes

All alleles(10) : Targeted(3) Gene trapped(7)

Gene Ontology (GO) classifications

All GO classifications: (3 annotations)

Process	biological_process
Component	cellular_component
Function	molecular_function

External Resources: FuncBase

Expression

Literature Summary: (1 records)
Data Summary: Results (15)    Tissues (13)   
Theiler Stages: 2, 3, 4, 5, 28

Assay Type	Results
RT-PCR	15

cDNA source data(36)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(37) cDNA(36) Primer pair(1)
Microarray probesets(3)

Other database links

VEGA Gene Model	OTTMUSG00000005800 (Evidence)
Ensembl Gene Model	ENSMUSG00000036819 (Evidence)
Entrez Gene	194952 (Evidence)
UniGene	295954
DFCI	TC1580009, TC1591404, TC1596805, TC1597208
DoTS	DT.101734810, DT.101734811, DT.40173610, DT.55152627
NIA Mouse Gene Index	U012681
Consensus CDS Project	CCDS24768.1, CCDS56777.1
International Mouse Knockout Project Status	Jmjd4

Sequences

Length	Strain/Species
genomic	OTTMUSG00000005800	VEGA Gene Model | MGI Sequence Detail	8523	C57BL/6J
transcript	OTTMUST00000012836	VEGA | MGI Sequence Detail	4351	Not Applicable
polypeptide	OTTMUSP00000005967	VEGA | MGI Sequence Detail	427	Not Applicable

All sequences(53) RefSeq(5) UniProt(1)

Polymorphisms

SNPs(9 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR003347	JmjC domain
Protein Ontology	PR:000031190	JmjC domain-containing protein 4

References

(Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(33)