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Jmjd4 Gene Detail
Summary
  • Symbol
    Jmjd4
  • Name
    jumonji domain containing 4
  • Feature Type
    protein coding gene
  • IDs
    MGI:2144404
    NCBI Gene: 194952
Location & Maps
more
  • Sequence Map
    Chr11:59450045-59458567 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      8523 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 11, 37.71 cM
  • Mapping Data
    1 experiment
Homology
more
  • Human Ortholog
    JMJD4, jumonji domain containing 4
  • Vertebrate Orthologs
    10
  • Human Ortholog
    JMJD4, jumonji domain containing 4
    Orthology source: HGNC, HomoloGene
  • Links
    NCBI Gene ID: 65094
    neXtProt AC: NX_Q9H9V9

  • Chr Location
    1q42.13; chr1:227731189-227735499 (-)  GRCh38.p2

  • HomoloGene
    Vertebrate Homology Class 11306
    1 human;1 mouse;1 rat;1 chimpanzee;1 rhesus macaque;1 cattle;1 dog;1 chicken;1 western clawed frog;1 zebrafish
  • HCOP
    human homology predictions: JMJD4
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotype references
  • All Mutations and Alleles
    11
  • Chemically induced (other)
    1
  • Gene trapped
    7
  • Targeted
    3
  • Genomic Mutations
    1 involving Jmjd4
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000005800 VEGA Gene Model | MGI Sequence Detail 8523 C57BL/6J ±  kb
transcript OTTMUST00000012836 VEGA | MGI Sequence Detail 4351 Not Applicable  
polypeptide OTTMUSP00000005967 VEGA | MGI Sequence Detail 427 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    96 from dbSNP Build 142
Protein
Information
less
  • UniProt
    1 Sequence
  • Protein Ontology
    PR:000031190 JmjC domain-containing protein 4
  • InterPro Domains
    IPR003347 JmjC domain
Molecular
Reagents
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  • All nucleic 37
    cDNA 36
    Primer pair 1

    Microarray probesets 3
References
more
  • Summaries
    All 29
    Developmental Gene Expression 1
    Phenotypes 10
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/19/2016
MGI 6.04
The Jackson Laboratory