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Clint1
Gene Detail
 Symbol
Name
ID
Clint1
clathrin interactor 1
MGI:2144243
Synonyms C530049I24Rik, Epn4, mKIAA0171
Feature Type protein coding gene
Genetic Map
Chromosome 11
27.45 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr11:45852051-45910625 bp, + strand
From VEGA annotation of GRCm38

  58575 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:133740  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 2 zebrafish

Gene Tree: Clint1

Human
homologs
Human Homolog CLINT1, clathrin interactor 1
NCBI Gene ID 9685
neXtProt AC  NX_Q14677
Human Synonyms  CLINT, ENTH, EPN4, EPNR
Human Chr (Location)  5q33.3; chr5:157785743-157859175 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(20) : Gene trapped(17) Targeted(3)
Incidental mutations (data from APF )
Interactions
Clint1 interacts with 275 markers (Mir7-1, Mir15a, Mir15b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (12 annotations)
Process clathrin coat assembly, endocytosis
Component clathrin-coated vesicle, cytoplasm, ...
Function clathrin binding, lipid binding
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (197)    Tissues (23)    Images (24)
Theiler Stages: 23
Assay TypeResults
RNA in situ 197
cDNA source data(12)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(14) cDNA(14)
Microarray probesets(4)
Other database
links
VEGA Gene ModelOTTMUSG00000005479 (Evidence)
Ensembl Gene ModelENSMUSG00000006169 (Evidence)
Entrez Gene216705 (Evidence)
DFCITC1602885, TC1603067, TC1718196
DoTSDT.101398228, DT.488247, DT.87058804, DT.91439594
NIA Mouse Gene IndexU012498
Consensus CDS ProjectCCDS36130.1
International Mouse Knockout Project StatusClint1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000005479 VEGA Gene Model | MGI Sequence Detail 58575 C57BL/6J ±  kb
transcript OTTMUST00000012199 VEGA | MGI Sequence Detail 3365 Not Applicable 
polypeptide OTTMUSP00000005626 VEGA | MGI Sequence Detail 641 Not Applicable 

For the selected sequences
All sequences(55) RefSeq(9) UniProt(6)
Polymorphisms SNPs within 2kb(252 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR008942 ENTH/VHS
InterPro IPR001026 Epsin domain, N-terminal
InterPro IPR013809 Epsin-like, N-terminal
Protein Ontology PR:000005580 clathrin interactor 1
References (Earliest) J:72894 McIntire JJ, et al., Identification of Tapr (an airway hyperreactivity regulatory locus) and the linked Tim gene family. Nat Immunol. 2001 Dec;2(12):1109-16
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(38)
Other
accession IDs
MGI:2148016, MGI:2444042

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
09/23/2014
MGI 5.19
The Jackson Laboratory