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Rdh9 Gene Detail
Summary
  • Symbol
    Rdh9
  • Name
    retinol dehydrogenase 9
  • Synonyms
    Crad3
  • Feature Type
    protein coding gene
  • IDs
    MGI:2143528
    NCBI Gene: 103142
Location & Maps
more
  • Sequence Map
    Chr10:127776386-127792697 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      16312 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 10, 75.21 cM
  • Mapping Data
    1 experiment
Homology
more
  • Human Ortholog
    RDH16, retinol dehydrogenase 16 (all-trans)
  • Vertebrate Orthologs
    22
  • Human Ortholog
    RDH16, retinol dehydrogenase 16 (all-trans)
    Orthology source: HomoloGene
  • Synonyms
    RODH-4, SDR9C8
  • Links
    NCBI Gene ID: 8608
    neXtProt AC: NX_O75452

  • Chr Location
    12q13.3; chr12:56951431-56959374 (-)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    3 phenotype references
Mice homozygous for a knock-out allele are viable, fertile and healthy, with no apparent alterations in tissue retinoid and serum dihydrotestosterone levels.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000027659 VEGA Gene Model | MGI Sequence Detail 16312 C57BL/6J ±  kb
transcript OTTMUST00000068438 VEGA | MGI Sequence Detail 2698 Not Applicable  
polypeptide OTTMUSP00000034607 VEGA | MGI Sequence Detail 317 Not Applicable  
For the selected sequence
Polymorphisms
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  • SNPs within 2kb
    60 from dbSNP Build 142
Protein
Information
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  • UniProt
    4 Sequences
  • InterPro Domains
    IPR016040 NAD(P)-binding domain
    IPR020904 Short-chain dehydrogenase/reductase, conserved site
    IPR002347 Short-chain dehydrogenase/reductase SDR
Molecular
Reagents
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  • All nucleic 8
    cDNA 8

    Microarray probesets 4
References
more
  • Summaries
    All 21
    Developmental Gene Expression 2
    Gene Ontology 1
    Phenotypes 3
  • Earliest
    J:83534 Zhuang R, et al., cis-Retinol/androgen dehydrogenase, isozyme 3 (CRAD3): a short-chain dehydrogenase active in a reconstituted path of 9-cis-retinoic acid biosynthesis in intact cells. Biochemistry. 2002 Mar 12;41(10):3477-83
  • Latest
    J:177585 Hesse K, et al., AP-2delta is a crucial transcriptional regulator of the posterior midbrain. PLoS One. 2011;6(8):e23483

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
06/22/2016
MGI 6.04
The Jackson Laboratory