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Pomgnt2
Gene Detail
Symbol

Name
ID
Pomgnt2
protein O-linked mannose beta 1,4-N-acetylglucosaminyltransferase 2
MGI:2143424
Synonyms
C85492, Gtdc2
Feature Type
protein coding gene
Genetic Map
Chromosome 9
72.78 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr9:121981606-121996026 bp, - strand
From Ensembl annotation of GRCm38

  14421 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:32795  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Pomgnt2

Human
homologs
Human Homolog POMGNT2, protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-)
NCBI Gene ID 84892
neXtProt AC  NX_Q8NAT1
Human Synonyms  AGO61, C3orf39, GTDC2, MDDGA8
Human Chr (Location)  3p22.1; chr3:43079229-43106083 (-)  GRCh38
Disease Associations  (1) Diseases Associated with Human POMGNT2
Mutations,
alleles, and
phenotypes
All mutations/alleles(9) : Gene trapped(6) Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Pomgnt2 interacts with 41 markers (Mir19b-1, Mir19b-2, Mir22, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (1 records)
cDNA source data(23)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(23) cDNA(23)
Microarray probesets(3)
Other database
links
Ensembl Gene ModelENSMUSG00000066235 (Evidence)
Entrez Gene215494 (Evidence)
UniGene402151
DFCITC1576262
DoTSDT.99848535, DT.97399773, DT.40177325, DT.99848537
NIA Mouse Gene IndexU041445
EC2.4.1.-
Consensus CDS ProjectCCDS23643.1
International Mouse Knockout Project StatusPomgnt2
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000066235 Ensembl Gene Model | MGI Sequence Detail 14421 C57BL/6J ±  kb
transcript ENSMUST00000084743 Ensembl | MGI Sequence Detail 2369 Not Applicable 
polypeptide ENSMUSP00000095868 Ensembl | MGI Sequence Detail 580 Not Applicable 

For the selected sequences
All sequences(33) RefSeq(10) UniProt(1)
Polymorphisms
SNPs within 2kb(62 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR003961 Fibronectin, type III
InterPro IPR007657 Glycosyltransferase AER61, uncharacterised
InterPro IPR013783 Immunoglobulin-like fold
Protein Ontology PR:000031355 glycosyltransferase-like domain-containing protein 2
References
(Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:200065 Yoshida-Moriguchi T, et al., SGK196 is a glycosylation-specific O-mannose kinase required for dystroglycan function. Science. 2013 Aug 23;341(6148):896-9
All references(33)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
12/16/2014
MGI 5.20
The Jackson Laboratory