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Pomgnt2
Gene Detail
Symbol

Name
ID
Pomgnt2
protein O-linked mannose beta 1,4-N-acetylglucosaminyltransferase 2
MGI:2143424
Synonyms
C85492, Gtdc2
Feature Type
protein coding gene
Genetic Map
Chromosome 9
72.78 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr9:121981606-121996026 bp, - strand
From NCBI annotation of GRCm38

  14421 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:32795  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: POMGNT2
Gene Tree: Pomgnt2

Human
homologs
POMGNT2, protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-)
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 84892
neXtProt AC: NX_Q8NAT1

Human Synonyms: AGO61, C3orf39, GTDC2, MDDGA8

Human Chr (Location): 3p22.1; chr3:43079229-43106083 (-)  GRCh38.p2

Disease Associations: (1) Diseases Associated with Human POMGNT2

Mutations,
alleles, and
phenotypes
All mutations/alleles(10) : Gene trapped(6) Targeted(4)
Incidental mutations (data from Mutagenetix , APF , CvDC )
Interactions
Pomgnt2 interacts with 41 markers (Mir19b-1, Mir19b-2, Mir22, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (1 records)
Data Summary: Results (11)    Tissues (10)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 11
cDNA source data(24)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase pomgnt2 ; ZFIN pomgnt2    NEW 
Molecular
reagents
All nucleic(25) cDNA(24) Primer pair(1)
Microarray probesets(3)
Other database
links
Ensembl Gene Model ENSMUSG00000066235 (Evidence)
Entrez Gene 215494 (Evidence)
UniGene 402151
DFCI TC1576262
DoTS DT.99848535, DT.99848537, DT.97399773, DT.40177325
NIA Mouse Gene Index U041445
EC 2.4.1.-
Consensus CDS Project CCDS23643.1
International Mouse Phenotyping Consortium Status Pomgnt2
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 215494 NCBI Gene Model | MGI Sequence Detail 14421 C57BL/6J ±  kb
transcript NM_001289558 RefSeq | MGI Sequence Detail 2526 C57BL/6 
polypeptide Q8BW41 UniProt | EBI | MGI Sequence Detail 605 Not Applicable 

For the selected sequences
All sequences(36) RefSeq(12) UniProt(1)
Polymorphisms
SNPs within 2kb(62 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR003961 Fibronectin, type III
InterPro IPR007657 Glycosyltransferase AER61, uncharacterised
InterPro IPR013783 Immunoglobulin-like fold
Protein Ontology PR:000031355 glycosyltransferase-like domain-containing protein 2
Graphical View of Protein Domain Structure
References
(Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:215959 Yagi H, et al., AGO61-dependent GlcNAc modification primes the formation of functional glycans on alpha-dystroglycan. Sci Rep. 2013;3:3288
All references(32)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/21/2015
MGI 5.22
The Jackson Laboratory