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AW551984 Gene Detail
Summary
  • Symbol
    AW551984
  • Name
    expressed sequence AW551984
  • Feature Type
    protein coding gene
  • IDs
    MGI:2143322
    NCBI Gene: 244810
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:39587396-39604403 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 9, 20.98 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    207 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2143322
protein coding gene Chr9:39587396-39604774 (-)
129S1/SvImJ MGP_129S1SvImJ_G0034637
protein coding gene Chr9:37719892-37737013 (-)
A/J MGP_AJ_G0034618
protein coding gene Chr9:36778507-36795947 (-)
AKR/J MGP_AKRJ_G0034544
protein coding gene Chr9:37483939-37502783 (-)
BALB/cJ MGP_BALBcJ_G0034609
protein coding gene Chr9:36556401-36573514 (-)
C3H/HeJ MGP_C3HHeJ_G0034320
protein coding gene Chr9:37955244-37973472 (-)
C57BL/6NJ MGP_C57BL6NJ_G0035131
protein coding gene Chr9:38936884-38957288 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0032048
protein coding gene Chr9:36455384-36475760 (-)
CAST/EiJ MGP_CASTEiJ_G0033641
protein coding gene Chr9:37760151-37777300 (-)
CBA/J MGP_CBAJ_G0034295
protein coding gene Chr9:40286650-40305485 (-)
DBA/2J MGP_DBA2J_G0034452
protein coding gene Chr9:36747041-36763941 (-)
FVB/NJ MGP_FVBNJ_G0034393
protein coding gene Chr9:35961696-35979107 (-)
LP/J MGP_LPJ_G0034534
protein coding gene Chr9:37949025-37966358 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0034437
protein coding gene Chr9:42248468-42265505 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0035151
protein coding gene Chr9:37398241-37415230 (-)
PWK/PhJ MGP_PWKPhJ_G0033346
protein coding gene Chr9:36575795-36593281 (-)
SPRET/EiJ MGP_SPRETEiJ_G0033182
protein coding gene Chr9:37613695-37630707 (-)
WSB/EiJ MGP_WSBEiJ_G0033757
protein coding gene Chr9:37371971-37389869 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000038112 Ensembl Gene Model | MGI Sequence Detail 17008 C57BL/6J ±  kb
transcript ENSMUST00000119722 Ensembl | MGI Sequence Detail 4224 Not Applicable  
polypeptide ENSMUSP00000113212 Ensembl | MGI Sequence Detail 804 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    5 Sequences
  • InterPro Domains
    IPR013694 VIT domain
    IPR036465 von Willebrand factor A-like domain superfamily
    IPR002035 von Willebrand factor, type A
Molecular
Reagents
less
  • All nucleic 11
    cDNA 10
    Other 1

    Microarray probesets 5
References
more
  • Summaries
    All 19
    Developmental Gene Expression 2
    Gene Ontology 1
    Phenotypes 2
  • Earliest
    J:92208 Takasato M, et al., Identification of kidney mesenchymal genes by a combination of microarray analysis and Sall1-GFP knockin mice. Mech Dev. 2004 Jun;121(6):547-57
  • Latest
    J:243218 Hooper JE, et al., Systems biology of facial development: contributions of ectoderm and mesenchyme. Dev Biol. 2017 Jun 01;426(1):97-114

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/01/2019
MGI 6.14
The Jackson Laboratory