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Slc6a20a
Gene Detail
 Symbol
Name
ID
Slc6a20a
solute carrier family 6 (neurotransmitter transporter), member 20A
MGI:2143217
Synonyms A730081N20Rik, Xtrp3s1
Feature Type protein coding gene
Genetic Map
Chromosome 9
74.26 cM, cytoband F
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr9:123636122-123678885 bp, - strand
From VEGA annotation of GRCm38

  42764 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:10625  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken

Gene Tree: Slc6a20a

Human
homologs
Human Homolog SLC6A20, solute carrier family 6 (proline IMINO transporter), member 20
NCBI Gene ID 54716
neXtProt AC  NX_Q9NP91
Human Synonyms  SIT1, XT3, Xtrp3
Human Chr (Location)  3p21.3; chr3:45755449-45796547 (-)  GRCh38
Disease Associations  (2) Diseases Associated with Human SLC6A20
Mutations,
alleles, and
phenotypes
All mutations/alleles(6) : Targeted(6)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Slc6a20a interacts with 171 markers (Mir10b, Mir15a, Mir15b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (21 annotations)
Process amino acid transmembrane transport, amino acid transport, ...
Component apical plasma membrane, integral component of membrane, ...
Function amino acid transmembrane transporter activity, neurotransmitter:sodium symporter activity, ...
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (16)    Tissues (12)    Images (2)
Theiler Stages: 1, 2, 3, 5, 24, 25, 26, 28
Assay TypeResults
RT-PCR 16
cDNA source data(15)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(17) cDNA(15) Primer pair(2)
Microarray probesets(4)
Other database
links
VEGA Gene ModelOTTMUSG00000036109 (Evidence)
Ensembl Gene ModelENSMUSG00000036814 (Evidence)
Entrez Gene102680 (Evidence)
UniGene440867
DFCITC1579829
DoTSDT.484907, DT.94219488, DT.94219493
NIA Mouse Gene IndexU202561
Consensus CDS ProjectCCDS40817.1
International Mouse Knockout Project StatusSlc6a20a
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000036109 VEGA Gene Model | MGI Sequence Detail 42764 C57BL/6J ±  kb
transcript OTTMUST00000092800 VEGA | MGI Sequence Detail 2732 Not Applicable 
polypeptide OTTMUSP00000051356 VEGA | MGI Sequence Detail 592 Not Applicable 

For the selected sequences
All sequences(37) RefSeq(2) UniProt(3)
Polymorphisms SNPs within 2kb(407 from dbSNP Build 137)    SNPs within 2kb including multiple locations(431)
Protein-related
information
ResourceIDDescription
InterPro IPR000175 Sodium:neurotransmitter symporter
InterPro IPR002438 Sodium:neurotransmitter symporter, orphan
Protein Ontology PR:000015187 sodium- and chloride-dependent transporter XTRP3
References (Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(36)
Other
accession IDs
MGI:2443096

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/12/2014
MGI 5.19
The Jackson Laboratory