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AI593442 Gene Detail
Summary
  • Symbol
    AI593442
  • Name
    expressed sequence AI593442
  • Feature Type
    protein coding gene
  • IDs
    MGI:2143099
    NCBI Gene: 330941
  • Alliance
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:52673042-52679780 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 9, 29.12 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    20 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2143099
protein coding gene Chr9:52673032-52680348 (-)
129S1/SvImJ MGP_129S1SvImJ_G0034806
protein coding gene Chr9:51673226-51679599 (-)
A/J MGP_AJ_G0034787
protein coding gene Chr9:50061175-50067558 (-)
AKR/J MGP_AKRJ_G0034715
protein coding gene Chr9:51119676-51126030 (-)
BALB/cJ MGP_BALBcJ_G0034779
protein coding gene Chr9:49817578-49823947 (-)
C3H/HeJ MGP_C3HHeJ_G0034489
protein coding gene Chr9:51608727-51615108 (-)
C57BL/6NJ MGP_C57BL6NJ_G0035298
protein coding gene Chr9:53106053-53112437 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0032211
protein coding gene Chr9:49488493-49494880 (-)
CAST/EiJ MGP_CASTEiJ_G0033811
protein coding gene Chr9:51602991-51609392 (-)
CBA/J MGP_CBAJ_G0034460
protein coding gene Chr9:54936415-54942798 (-)
DBA/2J MGP_DBA2J_G0034619
protein coding gene Chr9:49910698-49917067 (-)
FVB/NJ MGP_FVBNJ_G0034561
protein coding gene Chr9:49116963-49123345 (-)
LP/J MGP_LPJ_G0034701
protein coding gene Chr9:51996536-52002920 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0034604
protein coding gene Chr9:56532354-56538738 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0035320
protein coding gene Chr9:51122887-51129262 (-)
PWK/PhJ MGP_PWKPhJ_G0033515
protein coding gene Chr9:49917225-49923639 (-)
SPRET/EiJ MGP_SPRETEiJ_G0033351
protein coding gene Chr9:51397397-51403778 (-)
WSB/EiJ MGP_WSBEiJ_G0033923
protein coding gene Chr9:51134990-51141372 (-)



Homology
more
  • Human Ortholog
    C11orf87, chromosome 11 open reading frame 87
  • Vertebrate Orthologs
    9
  • Human Ortholog
    C11orf87, chromosome 11 open reading frame 87
    Orthology source: HomoloGene, HGNC
  • Synonyms
    LOH11CR1A, NEURIM1
  • Links
    NCBI Gene ID: 399947
    neXtProt AC: NX_Q6NUJ2
    UniProt: Q6NUJ2

  • Chr Location
    11q22.3; chr11:109422120-109433003 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000078307 Ensembl Gene Model | MGI Sequence Detail 6739 C57BL/6J ±  kb
transcript ENSMUST00000213937 Ensembl | MGI Sequence Detail 5674 Not Applicable  
polypeptide ENSMUSP00000149532 Ensembl | MGI Sequence Detail 199 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    3 Sequences
  • InterPro Domains
    IPR037670 Uncharacterized protein C11orf87
Molecular
Reagents
less
  • All nucleic 7
    cDNA 7

    Microarray probesets 3
References
more
  • Summaries
    All 19
    Developmental Gene Expression 3
    Gene Ontology 1
    Phenotypes 1
  • Earliest
    J:122989 Visel A, et al., GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D552-6
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory