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Ncapd3 Gene Detail
Summary
  • Symbol
    Ncapd3
  • Name
    non-SMC condensin II complex, subunit D3
  • Synonyms
    2810487N22Rik, 4632407J06Rik, B130055D15Rik, mKIAA0056
  • Feature Type
    protein coding gene
  • IDs
    MGI:2142989
    NCBI Gene: 78658
  • Gene Overview
    MyGene.info: NCAPD3
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:27030175-27095315 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 9, 12.12 cM, cytoband A4
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    214 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2142989
protein coding gene Chr9:27030117-27096522 (.)
129S1/SvImJ MGP_129S1SvImJ_G0034506
protein coding gene Chr9:24492058-24558463 (+)
A/J MGP_AJ_G0034484
protein coding gene Chr9:23949494-24016166 (+)
AKR/J MGP_AKRJ_G0034410
protein coding gene Chr9:24428300-24492973 (+)
BALB/cJ MGP_BALBcJ_G0034475
protein coding gene Chr9:23833646-23897844 (+)
C3H/HeJ MGP_C3HHeJ_G0034187
protein coding gene Chr9:24800507-24868876 (+)
C57BL/6NJ MGP_C57BL6NJ_G0034996
protein coding gene Chr9:25398391-25477403 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0031926
protein coding gene Chr9:22866576-22929079 (+)
CAST/EiJ MGP_CASTEiJ_G0033510
protein coding gene Chr9:24598152-24665813 (+)
CBA/J MGP_CBAJ_G0034160
protein coding gene Chr9:26305766-26377591 (+)
DBA/2J MGP_DBA2J_G0034318
protein coding gene Chr9:23980319-24046584 (+)
FVB/NJ MGP_FVBNJ_G0034261
protein coding gene Chr9:23407973-23473271 (+)
LP/J MGP_LPJ_G0034404
protein coding gene Chr9:24690938-24756087 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0034305
protein coding gene Chr9:28001567-28069038 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0035016
protein coding gene Chr9:24417902-24485555 (+)
PWK/PhJ MGP_PWKPhJ_G0033215
protein coding gene Chr9:23883344-23945285 (+)
SPRET/EiJ MGP_SPRETEiJ_G0033049
protein coding gene Chr9:24472269-24547621 (+)
WSB/EiJ MGP_WSBEiJ_G0033625
protein coding gene Chr9:24139253-24205005 (+)



Homology
more
  • Human Ortholog
    NCAPD3, non-SMC condensin II complex subunit D3
  • Vertebrate Orthologs
    10
  • Human Ortholog
    NCAPD3, non-SMC condensin II complex subunit D3
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CAPD3, CAP-D3, hCAP-D3, hcp-6, hHCP-6, MCPH22
  • Links
    NCBI Gene ID: 23310
    neXtProt AC: NX_P42695
    UniProt: P42695

  • Chr Location
    11q25; chr11:134152442-134225443 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000035024 Ensembl Gene Model | MGI Sequence Detail 65141 C57BL/6J ±  kb
transcript ENSMUST00000216677 Ensembl | MGI Sequence Detail 5149 Not Applicable  
polypeptide ENSMUSP00000150938 Ensembl | MGI Sequence Detail 1506 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    5 Sequences
  • InterPro Domains
    IPR011989 Armadillo-like helical
    IPR016024 Armadillo-type fold
    IPR012371 Condensin-2 complex subunit D3
    IPR032682 Condensin complex subunit 1, C-terminal
    IPR026971 Condensin subunit 1/Condensin-2 complex subunit D3
Molecular
Reagents
less
  • All nucleic 118
    cDNA 117
    Primer pair 1

    Microarray probesets 5
Other
Accession IDs
less
MGI:1922964, MGI:1925908, MGI:2143198
References
more
  • Summaries
    All 36
    Gene Ontology 6
    Phenotypes 4
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:222181 Nishide K, et al., Overlapping and non-overlapping functions of condensins I and II in neural stem cell divisions. PLoS Genet. 2014 Dec;10(12):e1004847

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory