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Cog4
Gene Detail
Symbol

Name
ID
Cog4
component of oligomeric golgi complex 4
MGI:2142808
Synonyms
D8Ertd515e
Feature Type
protein coding gene
Genetic Map
Chromosome 8
57.76 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr8:110846600-110882227 bp, + strand
From VEGA annotation of GRCm38

  35628 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:7155  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: COG4
Gene Tree: Cog4

Human
homologs
COG4, component of oligomeric golgi complex 4
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 25839
neXtProt AC: NX_Q9H9E3

Human Synonyms: CDG2J, COD1

Human Chr (Location): 16q22.1; chr16:70480569-70523554 (-)  GRCh38.p2

Disease Associations: (1) Diseases Associated with Human COG4

Mutations,
alleles, and
phenotypes
All mutations/alleles(18) : Gene trapped(16) Targeted(2)
Incidental mutations (data from Mutagenetix , APF , CvDC )
Interactions
Cog4 interacts with 177 markers (Mir7-2, Mir7b, Mir17, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (9 annotations)
Process Golgi organization, Golgi vesicle prefusion complex stabilization, ...
Component Golgi apparatus, Golgi transport complex, ...
Function molecular_function
External Resources: FuncBase
Expression
cDNA source data(128)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase cog4    NEW 
Molecular
reagents
All nucleic(129) cDNA(128) Primer pair(1)
Microarray probesets(5)
Other database
links
VEGA Gene Model OTTMUSG00000037836 (Evidence)
Ensembl Gene Model ENSMUSG00000031753 (Evidence)
Entrez Gene 102339 (Evidence)
UniGene 272930
DFCI TC1572854, TC1614635, TC1646310
NIA Mouse Gene Index U128320, U009825
Consensus CDS Project CCDS40477.1
International Mouse Phenotyping Consortium Status Cog4
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000037836 VEGA Gene Model | MGI Sequence Detail 35628 C57BL/6J ±  kb
transcript OTTMUST00000097598 VEGA | MGI Sequence Detail 2737 Not Applicable 
polypeptide OTTMUSP00000054747 VEGA | MGI Sequence Detail 785 Not Applicable 

For the selected sequences
All sequences(99) RefSeq(6) UniProt(9)
Polymorphisms
SNPs within 2kb(167 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR013167 Conserved oligomeric Golgi complex, subunit 4
Protein Ontology PR:000005687 conserved oligomeric Golgi complex subunit 4
References
(Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9
All references(30)
Other
accession IDs
MGI:1261770

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/21/2015
MGI 5.22
The Jackson Laboratory