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Vat1l
Gene Detail
Symbol

Name
ID
Vat1l
vesicle amine transport protein 1 homolog-like (T. californica)
MGI:2142534
Synonyms
mKIAA1576
Feature Type
protein coding gene
Genetic Map
Chromosome 8
60.62 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr8:114205612-114374071 bp, + strand
From VEGA annotation of GRCm38

  168460 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:10855  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Protein SuperFamily: alcohol dehydrogenase
Gene Tree: Vat1l

Human
homologs
Human Homolog VAT1L, vesicle amine transport 1-like
NCBI Gene ID 57687
neXtProt AC  NX_Q9HCJ6
Human Chr (Location)  16q23.1; chr16:77788586-77980104 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(2) : Gene trapped(1) Targeted(1)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Vat1l interacts with 307 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (11 annotations)
Process oxidation-reduction process
Function epoxyqueuosine reductase activity, malolactic enzyme activity, ...
External Resources: FuncBase
Expression
Literature Summary: (3 records)
Data Summary: Results (308)    Tissues (61)    Images (36)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 308
cDNA source data(39)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(41) cDNA(41)
Microarray probesets(4)
Other database
links
VEGA Gene ModelOTTMUSG00000031710 (Evidence)
Ensembl Gene ModelENSMUSG00000046844 (Evidence)
Entrez Gene270097 (Evidence)
UniGene334825
DFCITC1575463
DoTSDT.60105296, DT.101159468, DT.101290685, DT.101392276
NIA Mouse Gene IndexU009850
EC1.-.-.-
Consensus CDS ProjectCCDS22689.1
International Mouse Knockout Project StatusVat1l
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000031710 VEGA Gene Model | MGI Sequence Detail 168460 C57BL/6J ±  kb
transcript OTTMUST00000078542 VEGA | MGI Sequence Detail 3666 Not Applicable 
polypeptide OTTMUSP00000041769 VEGA | MGI Sequence Detail 417 Not Applicable 

For the selected sequences
All sequences(36) RefSeq(2) UniProt(3)
Polymorphisms
SNPs within 2kb(1197 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR013154 Alcohol dehydrogenase GroES-like
InterPro IPR002085 Alcohol dehydrogenase superfamily, zinc-type
InterPro IPR011032 GroES-like
InterPro IPR016040 NAD(P)-binding domain
InterPro IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site
Protein Ontology PR:000017265 synaptic vesicle membrane protein VAT-1-like
References
(Earliest) J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(33)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
10/21/2014
MGI 5.20
The Jackson Laboratory