About   Help   FAQ
Smim19 Gene Detail
Summary
  • Symbol
    Smim19
  • Name
    small integral membrane protein 19
  • Synonyms
    AI316807, EST-c39
  • Feature Type
    protein coding gene
  • IDs
    MGI:2142501
    NCBI Gene: 102032
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:22462614-22476879 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 8, 11.42 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    25 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2142501
protein coding gene Chr8:22462614-22476882 (-)
129S1/SvImJ MGP_129S1SvImJ_G0033452
protein coding gene Chr8:20316167-20330635 (-)
A/J MGP_AJ_G0033432
protein coding gene Chr8:19655579-19670047 (-)
AKR/J MGP_AKRJ_G0033357
protein coding gene Chr8:20303962-20318227 (-)
BALB/cJ MGP_BALBcJ_G0033428
protein coding gene Chr8:19780119-19794384 (-)
C3H/HeJ MGP_C3HHeJ_G0033142
protein coding gene Chr8:20498567-20512831 (-)
C57BL/6NJ MGP_C57BL6NJ_G0033944
protein coding gene Chr8:21174663-21188927 (-)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0032468
protein coding gene Chr8:19916495-19930879 (-)
CBA/J MGP_CBAJ_G0033117
protein coding gene Chr8:22029727-22043992 (-)
DBA/2J MGP_DBA2J_G0033272
protein coding gene Chr8:19624531-19638795 (-)
FVB/NJ MGP_FVBNJ_G0033216
protein coding gene Chr8:19417606-19432133 (-)
LP/J MGP_LPJ_G0033361
protein coding gene Chr8:20315121-20329384 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0033259
protein coding gene Chr8:21610305-21625915 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0033963
protein coding gene Chr8:20209053-20223317 (-)
PWK/PhJ MGP_PWKPhJ_G0032180
protein coding gene Chr8:19210966-19225456 (-)
SPRET/EiJ MGP_SPRETEiJ_G0032013
protein coding gene Chr8:19594020-19606947 (-)
WSB/EiJ MGP_WSBEiJ_G0032584
protein coding gene Chr8:20406129-20420394 (-)



Homology
more
  • Human Ortholog
    SMIM19, small integral membrane protein 19
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SMIM19, small integral membrane protein 19
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C8orf40
  • Links
    NCBI Gene ID: 114926
    neXtProt AC: NX_Q96E16
    UniProt: Q96E16

  • Chr Location
    8p11.21; chr8:42541155-42552997 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 26703
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: SMIM19
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 102032 NCBI Gene Model | MGI Sequence Detail 14266 C57BL/6J ±  kb
transcript NM_001012667 RefSeq | MGI Sequence Detail 1476 C57BL/6  
polypeptide Q80ZU4 UniProt | EBI | MGI Sequence Detail 107 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR029368 Small integral membrane protein 19
Molecular
Reagents
less
  • All nucleic 10
    cDNA 9
    Other 1

    Microarray probesets 3
Other
Accession IDs
less
MGI:2183032
References
more
  • Summaries
    All 23
    Developmental Gene Expression 1
    Gene Ontology 1
    Phenotypes 2
  • Earliest
    J:77230 Tanaka K, et al., Spermatogonia-dependent expression of testicular genes in mice. Dev Biol. 2002 Jun 15;246(2):466-79
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
10/15/2019
MGI 6.14
The Jackson Laboratory