About   Help   FAQ
Usb1
Gene Detail
Symbol

Name
ID
Usb1
U6 snRNA biogenesis 1
MGI:2142454
Synonyms
AA960436
Feature Type
protein coding gene
Genetic Map
Chromosome 8
47.12 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr8:95332292-95347507 bp, + strand
From VEGA annotation of GRCm38

  15216 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:11611  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: USB1
Gene Tree: Usb1

Human
homologs
USB1, U6 snRNA biogenesis 1
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 79650
neXtProt AC: NX_Q9BQ65

Human Synonyms: C16orf57, hUsb1, HVSL1, Mpn1, PN

Human Chr (Location): 16q21; chr16:57999600-58021623 (+)  GRCh38.p2

Disease Associations: (1) Diseases Associated with Human USB1

Mutations,
alleles, and
phenotypes
All mutations/alleles(5) : Gene trapped(2) Targeted(3)
Incidental mutations (data from APF )
Interactions
Usb1 interacts with 171 markers (Mir10a, Mir10b, Mir15a, ...)
Gene Ontology
(GO)
classifications
Expression
cDNA source data(49)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase usb1 ; ZFIN usb1    NEW 
Molecular
reagents
All nucleic(49) cDNA(49)
Microarray probesets(3)
Other database
links
VEGA Gene Model OTTMUSG00000031300 (Evidence)
Ensembl Gene Model ENSMUSG00000031792 (Evidence)
Entrez Gene 101985 (Evidence)
UniGene 29069
DFCI TC1578171, TC1702879
DoTS DT.110845729, DT.530655
NIA Mouse Gene Index U009685
EC 3.1.4.-
Consensus CDS Project CCDS22560.1
International Mouse Phenotyping Consortium Status Usb1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000031300 VEGA Gene Model | MGI Sequence Detail 15216 C57BL/6J ±  kb
transcript OTTMUST00000077545 VEGA | MGI Sequence Detail 1750 Not Applicable 
polypeptide OTTMUSP00000041036 VEGA | MGI Sequence Detail 267 Not Applicable 

For the selected sequences
All sequences(39) RefSeq(4) UniProt(2)
Polymorphisms
SNPs within 2kb(106 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR027521 Putative U6 snRNA phosphodiesterase
InterPro IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase
References
(Earliest) J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(30)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
08/18/2015
MGI 6.0
The Jackson Laboratory