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Samd1 Gene Detail
Summary
  • Symbol
    Samd1
  • Name
    sterile alpha motif domain containing 1
  • Feature Type
    protein coding gene
  • IDs
    MGI:2142433
    NCBI Gene: 666704
  • Alliance
    gene page
  • Transcription Start Sites
    11 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:84724145-84727044 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 8, 40.24 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    20 from dbSNP Build 142
  • Strain Annotations
    16
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2142433
 protein coding gene Chr8:84724130-84727044 (+)
129S1/SvImJ MGP_129S1SvImJ_G0033845
 protein coding gene Chr8:84862061-84864061 (+)
A/J MGP_AJ_G0033828
 protein coding gene Chr8:81537732-81540406 (+)
AKR/J MGP_AKRJ_G0033754
 protein coding gene Chr8:83948019-83950780 (+)
BALB/cJ MGP_BALBcJ_G0033821
 protein coding gene Chr8:81644415-81646340 (+)
C3H/HeJ MGP_C3HHeJ_G0033531
 protein coding gene Chr8:84558358-84560277 (+)
C57BL/6NJ MGP_C57BL6NJ_G0034341
 protein coding gene Chr8:88111311-88113228 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0031283
 protein coding gene Chr8:75338090-75340887 (+)
CAST/EiJ MGP_CASTEiJ_G0032861
 protein coding gene Chr8:83972703-83975350 (+)
CBA/J MGP_CBAJ_G0033507
 protein coding gene Chr8:91231416-91235172 (+)
DBA/2J no annotation
FVB/NJ MGP_FVBNJ_G0033608
 protein coding gene Chr8:80098721-80100855 (+)
LP/J MGP_LPJ_G0033752
 protein coding gene Chr8:84975166-84977091 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0033650
 protein coding gene Chr8:93738297-93739509 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0034358
 protein coding gene Chr8:83922762-83924763 (+)
PWK/PhJ MGP_PWKPhJ_G0032565
 protein coding gene Chr8:80399448-80401489 (+)
SPRET/EiJ no annotation
WSB/EiJ MGP_WSBEiJ_G0032974
 protein coding gene Chr8:84337258-84339295 (+)



Homology
more
  • Human Ortholog
    SAMD1, sterile alpha motif domain containing 1
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SAMD1, sterile alpha motif domain containing 1
  • Links
    NCBI Gene ID: 90378
    neXtProt AC: NX_Q6SPF0
    UniProt: Q6SPF0

  • Chr Location
    19p13.12; chr19:14088417-14090420 (-)  GRCh38.p7
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    32 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    16
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    672
  • cDNA Data
    49
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 666704 NCBI Gene Model | MGI Sequence Detail 2900 C57BL/6J ±  kb
transcript NM_001081415 RefSeq | MGI Sequence Detail 2256 C57BL/6  
polypeptide D3YXK1 UniProt | EBI | MGI Sequence Detail 519 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 49
    cDNA 49

    Microarray probesets 1
References
more
  • Summaries
    All 51
    Gene Ontology 4
    Phenotypes 32
  • Earliest
    J:13049 Gruneberg H, Genetical studies on the skeleton of the mouse. XVIII. Three genes for syndactylism. J Genet. 1956;54:113-145
  • Latest
    J:314091 Tian S, et al., The miR-378c-Samd1 circuit promotes phenotypic modulation of vascular smooth muscle cells and foam cells formation in atherosclerosis lesions. Sci Rep. 2021 May 18;11(1):10548
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
06/28/2022
MGI 6.20 		The Jackson Laboratory