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Trim68
Gene Detail
Symbol

Name
ID
Trim68
tripartite motif-containing 68
MGI:2142077
Synonyms
F730114J12Rik, Rnf137, SS-56
Feature Type
protein coding gene
Genetic Map
Chromosome 7
54.80 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr7:102677580-102687326 bp, - strand
From Ensembl annotation of GRCm38

  9747 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:9991  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog

HCOP human homology predictions: TRIM68
Protein SuperFamily: tripartite motif-containing protein
Gene Tree: Trim68

Human
homologs
TRIM68, tripartite motif containing 68
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 55128
neXtProt AC: NX_Q6AZZ1

Human Synonyms: GC109, RNF137, SS56, SS-56

Human Chr (Location): 11p15.4; chr11:4598672-4608259 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(2) : Targeted(2)
Incidental mutations (data from APF , CvDC )
Interactions
Trim68 interacts with 134 markers (Mir1b, Mir10a, Mir10b, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (2 records)
Data Summary: Results (39)    Tissues (37)    Images (4)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 39
cDNA source data(22)
Other mouse links: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(22) cDNA(22)
Microarray probesets(2)
Other database
links
Ensembl Gene Model ENSMUSG00000073968 (Evidence)
Entrez Gene 101700 (Evidence)
UniGene 39043
DFCI TC1581449
DoTS DT.101723970, DT.527273
NIA Mouse Gene Index U041074
EC 6.3.2.-
Consensus CDS Project CCDS40052.1
International Mouse Phenotyping Consortium Status Trim68
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000073968 Ensembl Gene Model | MGI Sequence Detail 9747 C57BL/6J ±  kb
transcript ENSMUST00000082175 Ensembl | MGI Sequence Detail 2389 Not Applicable 
polypeptide ENSMUSP00000080813 Ensembl | MGI Sequence Detail 485 Not Applicable 

For the selected sequences
All sequences(30) RefSeq(8) UniProt(2)
Polymorphisms
SNPs within 2kb(65 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR001870 B30.2/SPRY domain
InterPro IPR003879 Butyrophylin-like
InterPro IPR013320 Concanavalin A-like lectin/glucanase, subgroup
InterPro IPR003877 SPla/RYanodine receptor SPRY
InterPro IPR006574 SPRY-associated
InterPro IPR000315 Zinc finger, B-box
InterPro IPR013083 Zinc finger, RING/FYVE/PHD-type
InterPro IPR001841 Zinc finger, RING-type
InterPro IPR017907 Zinc finger, RING-type, conserved site
Protein Ontology PR:000032494 E3 ubiquitin-protein ligase TRIM68
References
(Earliest) J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(28)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/21/2015
MGI 5.22
The Jackson Laboratory