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Rnf40 Gene Detail
Summary
  • Symbol
    Rnf40
  • Name
    ring finger protein 40
  • Synonyms
    MGC:19037, mKIAA0661
  • Feature Type
    protein coding gene
  • IDs
    MGI:2142048
    NCBI Gene: 233900
  • Gene Overview
    MyGene.info: RNF40
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:127588698-127603605 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 7, 69.61 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    100 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2142048
protein coding gene Chr7:127588698-127604799 (.)
129S1/SvImJ MGP_129S1SvImJ_G0033046
protein coding gene Chr7:131951000-131967020 (+)
A/J MGP_AJ_G0033029
protein coding gene Chr7:128440934-128456971 (+)
AKR/J MGP_AKRJ_G0032961
protein coding gene Chr7:131746562-131762600 (+)
BALB/cJ MGP_BALBcJ_G0033030
protein coding gene Chr7:128087243-128103274 (+)
C3H/HeJ MGP_C3HHeJ_G0032744
protein coding gene Chr7:131649027-131665063 (+)
C57BL/6NJ MGP_C57BL6NJ_G0033539
protein coding gene Chr7:137095143-137111183 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0030512
protein coding gene Chr7:129629602-129646213 (+)
CAST/EiJ MGP_CASTEiJ_G0032073
protein coding gene Chr7:123444675-123461505 (+)
CBA/J MGP_CBAJ_G0032717
protein coding gene Chr7:141722903-141741452 (+)
DBA/2J MGP_DBA2J_G0032869
protein coding gene Chr7:126414917-126430952 (+)
FVB/NJ MGP_FVBNJ_G0032822
protein coding gene Chr7:126261460-126277497 (+)
LP/J MGP_LPJ_G0032963
protein coding gene Chr7:133431021-133447052 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0032854
protein coding gene Chr7:142838841-142854883 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0033559
protein coding gene Chr7:130741890-130757722 (+)
PWK/PhJ MGP_PWKPhJ_G0031780
protein coding gene Chr7:119424371-119440972 (+)
SPRET/EiJ MGP_SPRETEiJ_G0031626
protein coding gene Chr7:117551072-117567045 (+)
WSB/EiJ MGP_WSBEiJ_G0032185
protein coding gene Chr7:131708724-131724750 (+)



Homology
more
  • Human Ortholog
    RNF40, ring finger protein 40
  • Vertebrate Orthologs
    8
  • Human Ortholog
    RNF40, ring finger protein 40
    Orthology source: HomoloGene, HGNC
  • Synonyms
    BRE1B, RBP95, STARING
  • Links
    NCBI Gene ID: 9810
    neXtProt AC: NX_O75150
    UniProt: O75150

  • Chr Location
    16p11.2; chr16:30761612-30800231 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 233900 NCBI Gene Model | MGI Sequence Detail 14908 C57BL/6J ±  kb
transcript NM_172281 RefSeq | MGI Sequence Detail 4172 C57BL/6  
polypeptide Q3U319 UniProt | EBI | MGI Sequence Detail 1001 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 9
    cDNA 9

    Microarray probesets 3
References
more
  • Summaries
    All 33
    Developmental Gene Expression 2
    Gene Ontology 5
    Phenotypes 5
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:183708 Vethantham V, et al., Dynamic loss of H2B ubiquitylation without corresponding changes in H3K4 trimethylation during myogenic differentiation. Mol Cell Biol. 2012 Mar;32(6):1044-55

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory