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Clrn3 Gene Detail
Summary
  • Symbol
    Clrn3
  • Name
    clarin 3
  • Synonyms
    Tmem12
  • Feature Type
    protein coding gene
  • IDs
    MGI:2142022
    NCBI Gene: 212070
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:135511466-135528654 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 7, 81.27 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    121 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2142022
protein coding gene Chr7:135511456-135528654 (-)
129S1/SvImJ MGP_129S1SvImJ_G0033134
protein coding gene Chr7:140362969-140384523 (-)
A/J MGP_AJ_G0033116
protein coding gene Chr7:136443002-136460288 (-)
AKR/J MGP_AKRJ_G0033048
protein coding gene Chr7:140105726-140124718 (-)
BALB/cJ MGP_BALBcJ_G0033117
protein coding gene Chr7:136201210-136218729 (-)
C3H/HeJ MGP_C3HHeJ_G0032831
protein coding gene Chr7:139966542-139985951 (-)
C57BL/6NJ MGP_C57BL6NJ_G0033628
protein coding gene Chr7:145670248-145695324 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0030601
protein coding gene Chr7:137675152-137692312 (-)
CAST/EiJ MGP_CASTEiJ_G0032161
protein coding gene Chr7:132081593-132100497 (-)
CBA/J MGP_CBAJ_G0032804
protein coding gene Chr7:150576762-150597162 (-)
DBA/2J MGP_DBA2J_G0032956
protein coding gene Chr7:134449490-134468130 (-)
FVB/NJ MGP_FVBNJ_G0032910
protein coding gene Chr7:134295645-134314258 (-)
LP/J MGP_LPJ_G0033050
protein coding gene Chr7:141904110-141922381 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0032941
protein coding gene Chr7:151416962-151436846 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0033648
protein coding gene Chr7:139141100-139159540 (-)
PWK/PhJ MGP_PWKPhJ_G0031867
protein coding gene Chr7:127521390-127539231 (-)
SPRET/EiJ MGP_SPRETEiJ_G0031713
protein coding gene Chr7:125916216-125933278 (-)
WSB/EiJ MGP_WSBEiJ_G0032272
protein coding gene Chr7:139993938-140012279 (-)



Homology
more
  • Human Ortholog
    CLRN3, clarin 3
  • Vertebrate Orthologs
    10
  • Human Ortholog
    CLRN3, clarin 3
    Orthology source: HomoloGene, HGNC
  • Synonyms
    TMEM12, USH3AL1
  • Links
    NCBI Gene ID: 119467
    neXtProt AC: NX_Q8NCR9
    UniProt: Q8NCR9

  • Chr Location
    10q26.2; chr10:127877841-127892947 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 17544
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: CLRN3
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000050866 Ensembl Gene Model | MGI Sequence Detail 17189 C57BL/6J ±  kb
transcript ENSMUST00000053716 Ensembl | MGI Sequence Detail 3305 Not Applicable  
polypeptide ENSMUSP00000056245 Ensembl | MGI Sequence Detail 226 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 40
    cDNA 40

    Microarray probesets 3
References
more
  • Summaries
    All 25
    Developmental Gene Expression 2
    Gene Ontology 1
    Phenotypes 3
  • Earliest
    J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
02/23/2021
MGI 6.16
The Jackson Laboratory