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Scaf1 Gene Detail
Summary
  • Symbol
    Scaf1
  • Name
    SR-related CTD-associated factor 1
  • Feature Type
    protein coding gene
  • IDs
    MGI:2141980
    NCBI Gene: 233208
Location & Maps
more
  • Sequence Map
    Chr7:45002948-45016363 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      13416 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 7, 29.07 cM
  • Mapping Data
    1 experiment
Homology
more
  • Human Ortholog
    SCAF1, SR-related CTD associated factor 1
  • Human Ortholog
    SCAF1, SR-related CTD associated factor 1
    Orthology source: HGNC
  • Synonyms
    SRA1
  • Links
    NCBI Gene ID: 58506
    neXtProt AC: NX_Q9H7N4

  • Chr Location
    19q13.3-q13.4; chr19:49640503-49658649 (+)  GRCh38.p2

  • HCOP
    human homology predictions: SCAF1
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000028917 VEGA Gene Model | MGI Sequence Detail 13416 C57BL/6J ±  kb
transcript OTTMUST00000071663 VEGA | MGI Sequence Detail 4209 Not Applicable  
polypeptide OTTMUSP00000036767 VEGA | MGI Sequence Detail 1256 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    76 from dbSNP Build 142
Protein
Information
less
  • UniProt
    1 Sequence
  • Protein Ontology
    PR:000014482 splicing factor, arginine/serine-rich 19
Molecular
Reagents
less
  • All nucleic 88
    cDNA 88

    Microarray probesets 3
References
more
  • Summaries
    All 25
    Gene Ontology 2
    Phenotypes 4
  • Earliest
    J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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Funding Information
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last database update
08/17/2016
MGI 6.05
The Jackson Laboratory