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C87436 Gene Detail
Summary
  • Symbol
    C87436
  • Name
    expressed sequence C87436
  • Feature Type
    protein coding gene
  • IDs
    MGI:2141787
    NCBI Gene: 232196
  • Alliance
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:86438374-86473500 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 37.69 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    173 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2141787
protein coding gene Chr6:86437328-86473500 (+)
129S1/SvImJ MGP_129S1SvImJ_G0030977
protein coding gene Chr6:87723502-87761149 (+)
A/J MGP_AJ_G0030943
protein coding gene Chr6:84339927-84376249 (+)
AKR/J MGP_AKRJ_G0030874
protein coding gene Chr6:86783313-86822918 (+)
BALB/cJ MGP_BALBcJ_G0030956
protein coding gene Chr6:84348639-84383247 (+)
C3H/HeJ MGP_C3HHeJ_G0030754
protein coding gene Chr6:97645378-97680417 (-)
C57BL/6NJ MGP_C57BL6NJ_G0031413
protein coding gene Chr6:90105588-90145299 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0028597
protein coding gene Chr6:82516143-82549616 (+)
CAST/EiJ MGP_CASTEiJ_G0030065
protein coding gene Chr6:86850496-86889000 (+)
CBA/J MGP_CBAJ_G0030640
protein coding gene Chr6:93652265-93689493 (+)
DBA/2J MGP_DBA2J_G0030796
protein coding gene Chr6:83658267-83693689 (+)
FVB/NJ MGP_FVBNJ_G0030749
protein coding gene Chr6:82839903-82877138 (+)
LP/J MGP_LPJ_G0030873
protein coding gene Chr6:87762761-87801213 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0030782
protein coding gene Chr6:97778312-97815098 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0031440
protein coding gene Chr6:86626488-86661117 (+)
PWK/PhJ MGP_PWKPhJ_G0029780
protein coding gene Chr6:82599132-82636229 (+)
SPRET/EiJ MGP_SPRETEiJ_G0029608
protein coding gene Chr6:85462978-85500218 (+)
WSB/EiJ MGP_WSBEiJ_G0030146
protein coding gene Chr6:87077568-87115619 (+)



Homology
more
  • Human Ortholog
    C2orf42, chromosome 2 open reading frame 42
  • Vertebrate Orthologs
    10
  • Human Ortholog
    C2orf42, chromosome 2 open reading frame 42
    Orthology source: HomoloGene, HGNC
  • Links
    NCBI Gene ID: 54980
    neXtProt AC: NX_Q9NWW7
    UniProt: Q9NWW7

  • Chr Location
    2p13.3; chr2:70149885-70191071 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 9897
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: C2orf42
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000046679 Ensembl Gene Model | MGI Sequence Detail 35127 C57BL/6J ±  kb
transcript ENSMUST00000050497 Ensembl | MGI Sequence Detail 2534 Not Applicable  
polypeptide ENSMUSP00000057461 Ensembl | MGI Sequence Detail 574 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR029269 Putative treble-clef, zinc-finger domain
    IPR026049 Uncharacterised protein C2orf42
Molecular
Reagents
less
  • All nucleic 55
    cDNA 55

    Microarray probesets 5
References
more
  • Summaries
    All 27
    Gene Ontology 2
    Phenotypes 8
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
11/05/2019
MGI 6.14
The Jackson Laboratory