C230066G23Rik Gene Detail

Summary

• Symbol
  C230066G23Rik
• Name
  RIKEN cDNA C230066G23 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2141339
  NCBI Gene: 97268
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr5:105728306-105729638 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 50.68 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  29 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2141339	lncRNA gene	Chr5:105728306-105729638 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0037038	sense intronic lncRNA gene	Chr5:107475668-107476995 (+)
A/J	MGP_AJ_G0037026	sense intronic lncRNA gene	Chr5:103381664-103382994 (+)
AKR/J	MGP_AKRJ_G0036974	sense intronic lncRNA gene	Chr5:106742779-106744095 (+)
BALB/cJ	MGP_BALBcJ_G0037017	sense intronic lncRNA gene	Chr5:104528003-104529334 (+)
C3H/HeJ	MGP_C3HHeJ_G0036704	sense intronic lncRNA gene	Chr5:107160869-107162193 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0037530	sense intronic lncRNA gene	Chr5:111955189-111956520 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034581	sense intronic lncRNA gene	Chr5:98486663-98488011 (+)
CAST/EiJ	MGP_CASTEiJ_G0035892	sense intronic lncRNA gene	Chr5:106056998-106058314 (+)
CBA/J	MGP_CBAJ_G0036679	sense intronic lncRNA gene	Chr5:115687341-115688714 (+)
DBA/2J	MGP_DBA2J_G0036854	sense intronic lncRNA gene	Chr5:103548733-103550055 (+)
FVB/NJ	MGP_FVBNJ_G0036804	sense intronic lncRNA gene	Chr5:102261339-102262663 (+)
LP/J	MGP_LPJ_G0036901	sense intronic lncRNA gene	Chr5:108088293-108089624 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036811	sense intronic lncRNA gene	Chr5:120733351-120734714 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037647	sense intronic lncRNA gene	Chr5:106275450-106276781 (+)
PWK/PhJ	MGP_PWKPhJ_G0035584	sense intronic lncRNA gene	Chr5:102017283-102018587 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0035393	sense intronic lncRNA gene	Chr5:103762076-103763388 (+)
WSB/EiJ	MGP_WSBEiJ_G0036092	sense intronic lncRNA gene	Chr5:106592459-106593770 (+)

Homology

• Gene Tree
  C230066G23Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  3 involving C230066G23Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  6

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24

• Ensembl
  ENSMUSG00000085771 (Evidence)
• NCBI Gene
  97268

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085771	Ensembl Gene Model | MGI Sequence Detail	1333	C57BL/6J
transcript	ENSMUST00000150195	Ensembl | MGI Sequence Detail	650	Not Applicable

Molecular
Reagents

• All nucleic 6

  cDNA 6

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:2141061

References

• Summaries
  All 18

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for C230066G23Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr47698	Chr5:105727350-105727369 (+)	-946 bp
Tssr47699	Chr5:105727391-105727399 (+)	-911 bp
Tssr47700	Chr5:105727401-105727427 (+)	-892 bp
Tssr47701	Chr5:105727433-105727443 (+)	-868 bp