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Rpap2
Gene Detail
 Symbol
Name
ID
Rpap2
RNA polymerase II associated protein 2
MGI:2141142
Feature Type protein coding gene
Genetic Map
Chromosome 5
52.23 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr5:107597373-107661838 bp, + strand
From VEGA annotation of GRCm38

  64466 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:11733  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Rpap2

Human
homologs
Human Homolog RPAP2, RNA polymerase II associated protein 2
NCBI Gene ID 79871
neXtProt AC  NX_Q8IXW5
Human Synonyms  C1orf82
Human Chr (Location)  1p22.1; chr1:92298965-92388175 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(6) : Gene trapped(3) Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Rpap2 interacts with 156 markers (Mir7-1, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (13 annotations)
Process dephosphorylation of RNA polymerase II C-terminal domain, regulation of transcription, DNA-templated, ...
Component cytoplasm, DNA-directed RNA polymerase II, holoenzyme, ...
Function CTD phosphatase activity, hydrolase activity, ...
External Resources: FuncBase
Expression
cDNA source data(66)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(66) cDNA(66)
Microarray probesets(5)
Other database
links
VEGA Gene ModelOTTMUSG00000023390 (Evidence)
Ensembl Gene ModelENSMUSG00000033773 (Evidence)
Entrez Gene231571 (Evidence)
UniGene482420
DFCITC1579266, TC1583953, TC1593574
DoTSDT.101203016, DT.110641387, DT.40172732, DT.55229882, DT.97405773
NIA Mouse Gene IndexU005932
EC3.1.3.16
Consensus CDS ProjectCCDS19506.1, CCDS51588.1, CCDS51589.1, CCDS71630.1, CCDS71631.1
International Mouse Knockout Project StatusRpap2
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000023390 VEGA Gene Model | MGI Sequence Detail 64466 C57BL/6J ±  kb
transcript OTTMUST00000056817 VEGA | MGI Sequence Detail 2268 Not Applicable 
polypeptide OTTMUSP00000027351 VEGA | MGI Sequence Detail 614 Not Applicable 

For the selected sequences
All sequences(75) RefSeq(22) UniProt(2)
Polymorphisms SNPs within 2kb(467 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR007308 Protein of unknown function DUF408
Protein Ontology PR:000014176 RNA polymerase II-associated protein 2
References (Earliest) J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(29)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/09/2014
MGI 5.19
The Jackson Laboratory