About   Help   FAQ
Rpap2 Gene Detail
Summary
  • Symbol
    Rpap2
  • Name
    RNA polymerase II associated protein 2
  • Feature Type
    protein coding gene
  • IDs
    MGI:2141142
    NCBI Gene: 231571
  • Gene Overview
    MyGene.info: RPAP2
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:107597373-107661838 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 5, 52.23 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    467 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2141142
protein coding gene Chr5:107597373-107661853 (.)
129S1/SvImJ MGP_129S1SvImJ_G0029843
protein coding gene Chr5:109639544-109710455 (+)
A/J MGP_AJ_G0029807
protein coding gene Chr5:105430738-105496376 (+)
AKR/J MGP_AKRJ_G0029752
protein coding gene Chr5:108829898-108905244 (+)
BALB/cJ MGP_BALBcJ_G0029819
protein coding gene Chr5:106562470-106629839 (+)
C3H/HeJ MGP_C3HHeJ_G0029541
protein coding gene Chr5:109279650-109348117 (+)
C57BL/6NJ MGP_C57BL6NJ_G0030273
protein coding gene Chr5:114122803-114190456 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0027507
protein coding gene Chr5:100492840-100556609 (+)
CAST/EiJ MGP_CASTEiJ_G0028955
protein coding gene Chr5:108227206-108295542 (+)
CBA/J MGP_CBAJ_G0029509
protein coding gene Chr5:117959702-118032998 (+)
DBA/2J MGP_DBA2J_G0029655
protein coding gene Chr5:105567377-105631869 (+)
FVB/NJ MGP_FVBNJ_G0029612
protein coding gene Chr5:104298035-104362962 (+)
LP/J MGP_LPJ_G0029743
protein coding gene Chr5:110222188-110293030 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0029644
protein coding gene Chr5:122872866-122942016 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0030307
protein coding gene Chr5:108395439-108468968 (+)
PWK/PhJ MGP_PWKPhJ_G0028668
protein coding gene Chr5:104372990-104437573 (+)
SPRET/EiJ MGP_SPRETEiJ_G0028506
protein coding gene Chr5:105912074-105978439 (+)
WSB/EiJ MGP_WSBEiJ_G0029028
protein coding gene Chr5:108698171-108766810 (+)



Homology
more
  • Human Ortholog
    RPAP2, RNA polymerase II associated protein 2
  • Vertebrate Orthologs
    10
  • Human Ortholog
    RPAP2, RNA polymerase II associated protein 2
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C1orf82, Rtr1
  • Links
    NCBI Gene ID: 79871
    neXtProt AC: NX_Q8IXW5
    UniProt: Q8IXW5

  • Chr Location
    1p22.1; chr1:92298965-92388175 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 11733
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: RPAP2
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    11 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000033773 Ensembl Gene Model | MGI Sequence Detail 64466 C57BL/6J ±  kb
transcript ENSMUST00000065422 Ensembl | MGI Sequence Detail 2268 Not Applicable  
polypeptide ENSMUSP00000070209 Ensembl | MGI Sequence Detail 614 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 67
    cDNA 67

    Microarray probesets 5
References
more
  • Summaries
    All 33
    Gene Ontology 5
    Phenotypes 11
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
11/06/2018
MGI 6.13
The Jackson Laboratory