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Ccz1 Gene Detail
Summary
  • Symbol
    Ccz1
  • Name
    CCZ1 vacuolar protein trafficking and biogenesis associated
  • Feature Type
    protein coding gene
  • IDs
    MGI:2141070
    NCBI Gene: 231874
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:143987909-144014853 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 5, 82.85 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    78 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2141070
protein coding gene Chr5:143987909-144014877 (-)
129S1/SvImJ MGP_129S1SvImJ_G0030343
protein coding gene Chr5:149295418-149325890 (-)
A/J no annotation
AKR/J MGP_AKRJ_G0030244
protein coding gene Chr5:147343125-147372547 (-)
BALB/cJ MGP_BALBcJ_G0030329
protein coding gene Chr5:144126055-144153235 (-)
C3H/HeJ MGP_C3HHeJ_G0030040
protein coding gene Chr5:148186932-148214790 (-)
C57BL/6NJ MGP_C57BL6NJ_G0030774
protein coding gene Chr5:154758438-154787624 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0027992
protein coding gene Chr5:136641288-136707343 (-)
CAST/EiJ MGP_CASTEiJ_G0029445
protein coding gene Chr5:147697725-147729899 (-)
CBA/J MGP_CBAJ_G0030010
protein coding gene Chr5:161115350-161145469 (-)
DBA/2J MGP_DBA2J_G0030160
protein coding gene Chr5:142643910-142673109 (-)
FVB/NJ MGP_FVBNJ_G0030115
protein coding gene Chr5:141851689-141880331 (-)
LP/J MGP_LPJ_G0030246
protein coding gene Chr5:149903079-149934888 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0030146
protein coding gene Chr5:163494880-163523672 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0030814
protein coding gene Chr5:147229053-147257011 (-)
PWK/PhJ MGP_PWKPhJ_G0029160
protein coding gene Chr5:141747690-141774265 (-)
SPRET/EiJ MGP_SPRETEiJ_G0028996
protein coding gene Chr5:144970420-144997792 (-)
WSB/EiJ MGP_WSBEiJ_G0029518
protein coding gene Chr5:148034090-148064983 (-)



Homology
more
  • Human Ortholog
    CCZ1, CCZ1 homolog, vacuolar protein trafficking and biogenesis associated
  • Vertebrate Orthologs
    12
  • Human Ortholog
    CCZ1, CCZ1 homolog, vacuolar protein trafficking and biogenesis associated
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C7orf28A, CCZ1A, CGI-43, H_DJ1163J12.2
  • Links
    NCBI Gene ID: 51622
    neXtProt AC: NX_P86790, NX_P86791
    UniProt: P86791

  • Chr Location
    7p22.1; chr7:5898710-5925974 (+)  GRCh38.p7

  • Human Ortholog
    CCZ1B, CCZ1 homolog B, vacuolar protein trafficking and biogenesis associated
    Orthology source: HomoloGene
  • Synonyms
    C7orf28A, C7orf28B, CCZ1, H_NH0577018.2
  • Links
    NCBI Gene ID: 221960
    neXtProt AC: NX_P86790, NX_P86791
    UniProt: P86790

  • Chr Location
    7p22.1; chr7:6798935-6826295 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 231874 NCBI Gene Model | MGI Sequence Detail 26945 C57BL/6J ±  kb
transcript NM_177682 RefSeq | MGI Sequence Detail 1786 Not Specified  
polypeptide Q8C1Y8 UniProt | EBI | MGI Sequence Detail 480 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 81
    cDNA 81

    Microarray probesets 2
References
more
  • Summaries
    All 27
    Developmental Gene Expression 2
    Gene Ontology 3
    Phenotypes 6
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
07/09/2019
MGI 6.14
The Jackson Laboratory