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AI839979 Gene Detail
Summary
  • Symbol
    AI839979
  • Name
    expressed sequence AI839979
  • Feature Type
    lncRNA gene
  • IDs
    MGI:2140975
    NCBI Gene: 100740
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:31726936-31728741 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 17.27 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    42 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2140975
 lncRNA gene Chr5:31714166-31728817 (-)
129S1/SvImJ MGP_129S1SvImJ_G0006606
 lincRNA gene Chr5:29596820-29598620 (-)
A/J MGP_AJ_G0006599
 lincRNA gene Chr5:28643171-28644973 (-)
AKR/J MGP_AKRJ_G0006569
 lincRNA gene Chr5:29793959-29795759 (-)
BALB/cJ MGP_BALBcJ_G0006574
 lincRNA gene Chr5:29173822-29175624 (-)
C3H/HeJ MGP_C3HHeJ_G0006521
 lincRNA gene Chr5:29815293-29817095 (-)
C57BL/6NJ MGP_C57BL6NJ_G0006738
 lincRNA gene Chr5:31418854-31420656 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0006006
 lincRNA gene Chr5:26249323-26251110 (-)
CAST/EiJ MGP_CASTEiJ_G0006446
 lincRNA gene Chr5:28849338-28851140 (-)
CBA/J MGP_CBAJ_G0006502
 lincRNA gene Chr5:32052950-32054752 (-)
DBA/2J MGP_DBA2J_G0006524
 lincRNA gene Chr5:28803777-28805579 (-)
FVB/NJ MGP_FVBNJ_G0006546
 lincRNA gene Chr5:28223499-28225301 (-)
LP/J MGP_LPJ_G0006606
 lincRNA gene Chr5:30045669-30047469 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0006530
 lincRNA gene Chr5:32880714-32882516 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0006744
 lincRNA gene Chr5:29291512-29293314 (-)
PWK/PhJ MGP_PWKPhJ_G0006384
 lincRNA gene Chr5:27962245-27964046 (-)
SPRET/EiJ MGP_SPRETEiJ_G0006294
 lincRNA gene Chr5:28756702-28758502 (-)
WSB/EiJ MGP_WSBEiJ_G0006496
 lincRNA gene Chr5:29362900-29364702 (-)



Homology
less
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    21 phenotype references
  • All Mutations and Alleles
    5
  • Chemically induced (other)
    2
  • Radiation induced
    2
  • Spontaneous
    1
  • Genomic Mutations
    5 involving AI839979
  • Find Mice (IMSR)
    0 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    1
Sequences &
Gene Models
less
  • All Sequences
    31
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 100740 NCBI Gene Model | MGI Sequence Detail 1806 C57BL/6J ±  kb
transcript NR_102275 RefSeq | MGI Sequence Detail 1173 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1

    Microarray probesets 2
References
more
  • Summaries
    All 31
    Diseases 1
    Phenotypes 21
  • Earliest
    J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
  • Latest
    J:125425 Howell GR, et al., Mutation of a ubiquitously expressed mouse transmembrane protein (Tapt1) causes specific skeletal homeotic transformations. Genetics. 2007 Feb;175(2):699-707
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory