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AI480526 Gene Detail
Summary
  • Symbol
    AI480526
  • Name
    expressed sequence AI480526
  • Feature Type
    lncRNA gene
  • IDs
    MGI:2140910
    NCBI Gene: 100675
  • Alliance
  • Transcription Start Sites
    8 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:123133723-123141666 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 5, 62.79 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    2 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2140910
lncRNA gene Chr5:123133723-123141666 (-)
129S1/SvImJ MGP_129S1SvImJ_G0006799
lincRNA gene Chr5:126820317-126828255 (-)
A/J MGP_AJ_G0006793
lincRNA gene Chr5:121567180-121575111 (-)
AKR/J MGP_AKRJ_G0006763
lincRNA gene Chr5:125482793-125490734 (-)
BALB/cJ MGP_BALBcJ_G0006769
lincRNA gene Chr5:122901556-122909478 (-)
C3H/HeJ MGP_C3HHeJ_G0006714
lincRNA gene Chr5:126100668-126116364 (-)
C57BL/6NJ MGP_C57BL6NJ_G0006934
lincRNA gene Chr5:131713767-131721743 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0006189
lincRNA gene Chr5:116150499-116158421 (-)
CAST/EiJ MGP_CASTEiJ_G0006637
lincRNA gene Chr5:125211079-125220408 (-)
CBA/J MGP_CBAJ_G0006696
lincRNA gene Chr5:136874560-136885725 (-)
DBA/2J MGP_DBA2J_G0006716
lincRNA gene Chr5:121613194-121621167 (-)
FVB/NJ MGP_FVBNJ_G0006740
lincRNA gene Chr5:120614541-120622478 (-)
LP/J MGP_LPJ_G0006800
lincRNA gene Chr5:127355709-127364513 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0006723
lincRNA gene Chr5:140559235-140568087 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0006936
lincRNA gene Chr5:125078056-125088086 (-)
PWK/PhJ MGP_PWKPhJ_G0006576
lincRNA gene Chr5:120400881-120408954 (-)
SPRET/EiJ MGP_SPRETEiJ_G0006482
lincRNA gene Chr5:122775402-122783296 (-)
WSB/EiJ MGP_WSBEiJ_G0006688
lincRNA gene Chr5:125746672-125756861 (-)



Homology
more
  • Human Ortholog
    LINC01089, long intergenic non-protein coding RNA 1089
  • Human Ortholog
    LINC01089, long intergenic non-protein coding RNA 1089
    Orthology source: HGNC
  • Synonyms
    LIMT
  • Links
    NCBI Gene ID: 338799

  • Chr Location
    12q24.31; chr12:121795267-121803484 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    5 phenotype references
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000090086 Ensembl Gene Model | MGI Sequence Detail 7944 C57BL/6J ±  kb
transcript ENSMUST00000159637 Ensembl | MGI Sequence Detail 1697 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 15
    cDNA 15

    Microarray probesets 2
References
more
  • Summaries
    All 14
    Phenotypes 5
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
09/15/2020
MGI 6.15
The Jackson Laboratory