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Slc44a1
Gene Detail
Symbol

Name
ID
Slc44a1
solute carrier family 44, member 1
MGI:2140592
Synonyms
2210409B22Rik, 4833416H08Rik, Cdw92, CHTL1, CTL1
Feature Type
protein coding gene
Genetic Map
Chromosome 4
28.66 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr4:53440413-53622478 bp, + strand
From VEGA annotation of GRCm38

  182066 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:11137  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Slc44a1

Human
homologs
Human Homolog SLC44A1, solute carrier family 44 (choline transporter), member 1
NCBI Gene ID 23446
neXtProt AC  NX_Q8WWI5
Human Synonyms  CD92, CDW92, CHTL1, CTL1
Human Chr (Location)  9q31.2; chr9:105244613-105438504 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(34) : Gene trapped(30) Targeted(4)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Slc44a1 interacts with 377 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (1 records)
Data Summary: Results (244)    Tissues (36)    Images (24)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 244
cDNA source data(12)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(14) cDNA(13) Primer pair(1)
Microarray probesets(11)
Other database
links
VEGA Gene ModelOTTMUSG00000007068 (Evidence)
Ensembl Gene ModelENSMUSG00000028412 (Evidence)
Entrez Gene100434 (Evidence)
DFCITC1579389, TC1604392, TC1625050, TC1621271, TC1614028, TC1723951, TC1638558
DoTSDT.40164775, DT.101709867, DT.94373705, DT.94240726, DT.94155928, DT.55114674, DT.493305
NIA Mouse Gene IndexU004332
Consensus CDS ProjectCCDS18189.1, CCDS51178.1
International Mouse Knockout Project StatusSlc44a1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000007068 VEGA Gene Model | MGI Sequence Detail 182066 C57BL/6J ±  kb
transcript OTTMUST00000016357 VEGA | MGI Sequence Detail 2176 Not Applicable 
polypeptide OTTMUSP00000007477 VEGA | MGI Sequence Detail 718 Not Applicable 

For the selected sequences
All sequences(93) RefSeq(13) UniProt(11)
Polymorphisms
SNPs within 2kb(1338 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR007603 Choline transporter-like
Protein Ontology PR:000001334 choline transporter-like protein 1
References
(Earliest) J:8500 Van der Bliek AM, et al., Overexpression and amplification of five genes in a multidrug-resistant Chinese hamster ovary cell line. Mol Cell Biol. 1986 May;6(5):1671-8
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(36)
Other
accession IDs
MGI:1917424, MGI:1921010

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
11/11/2014
MGI 5.20
The Jackson Laboratory